yeast5.txt
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UniProt - Swiss-Prot Protein Knowledgebase
Swiss Institute of Bioinformatics (SIB); Geneva, Switzerland
European Bioinformatics Institute (EBI); Hinxton, United Kingdom
Protein Information Resource (PIR); Washington DC, USA
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Description: Yeast (Saccharomyces cerevisiae) chromosome 5 (V): entries and
gene names
Name: yeast5.txt
Release: 56.1 of 02-Sep-2008
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Yeast chromosome V open reading frames
======================================
Reference for complete sequence:
RX [Pubmed: 9169868]
RA Dietrich F.S., Mulligan J.T., Hennessy K.M., Yelton M.A., Allen E.,
RA Araujo R., Aviles E., Berno A., Brennan T., Carpenter J., Chen E.,
RA Cherry J.M., Chung E., Duncan M., Guzman E., Hartzell G.,
RA Hunicke-Smith S., Hyman R.W., Kayser A., Komp C., Lashkari D., Lew H.,
RA Lin D., Mosedale D., Nakahara K., Namath A., Norgren R., Oefner P.,
RA Oh C., Petel F.X., Roberts D., Sehl P., Schramm S., Shogren T.,
RA Smith V., Taylor P., Wei Y., Botstein D., Davis R.W.;
RT "The nucleotide sequence of Saccharomyces cerevisiae chromosome V.";
RL Nature 387:78-81(1997).
Size of CHRV: 577 Kb
Total number of ORFs currently in Swiss-Prot: 304
=====================
ORF code nomenclature
=====================
YX[L|R]ddd[w|c]
Y = Yeast
X = Letter representing the chromosome (in this case X is 'E' for CHRV)
L | R = 'L' is for Left arm; 'R' is for Right arm
ddd = ORF number on the left or right arm
c | w = 'c' is for complementary strand; 'w' is for Watson strand
==================
Categories of ORFs
==================
1: genetically and biochemically characterized
2: genetically characterized, but exact function not known
3: high similarity to a protein of characterized function
4: high similarity to a protein of uncharacterized function
5: low similarity to an existing protein
6: no known similarity (temporary assignment)
7: probable non-expressed ORF
__________ __________ ______ ____ ___________________ ________________ ____
ORF Swiss-Prot Size Gene name and ORF code Cat.
code entry name AC a.a. synonyms synonyms
__________ __________ ______ ____ ___________________ ________________ ____
YEL077C YE077_YEAST Q3E7X8 1277 2
YEL077W-A YE190_YEAST Q8TFA4 160 4
YEL076C YEI6_YEAST P39971 216
YEL076C-A YE076_YEAST P89887 202 7
YEL075C YEI5_YEAST P39972 122 4
YEL075W-A YE075_YEAST P89888 203 YEL076W-C 7
YEL074W YEI4_YEAST P39973 112
YEL073C YEI3_YEAST P39974 107
YEL072W RMD6_YEAST P39975 231 RMD6 2
YEL071W DLD3_YEAST P39976 496 DLD3 2
YEL070W YEI0_YEAST P39941 502 3
YEL069C HXT13_YEAST P39924 564 HXT13; HXT8 1
YEL068C YEH8_YEAST P39977 110
YEL067C YEH7_YEAST P39978 195
YEL066W HPA3_YEAST P39979 179 HPA3 1
YEL065W SIT1_YEAST P39980 628 SIT1; ARN3 1
YEL064C AVT2_YEAST P39981 480 AVT2 1
YEL063C CAN1_YEAST P04817 590 CAN1 1
YEL062W NPR2_YEAST P39923 615 NPR2 2
YEL061C CIN8_YEAST P27895 1000 CIN8; KSL2 1
YEL060C PRTB_YEAST P09232 635 PRB1 1
YEL059W YEG9_YEAST P39982 102 6
YEL059C-A SOM1_YEAST Q05676 74 SOM1 2
YEL058W AGM1_YEAST P38628 557 PCM1; AGM1 1
YEL057C YEG7_YEAST P39983 233
YEL056W HAT2_YEAST P39984 401 HAT2 1
YEL055C DPO5_YEAST P39985 1022 POL5 1
YEL054C RL12_YEAST P17079 165 RPL12A; RPL15B 1
YEL053C MAK10_YEAST Q02197 733 MAK10 2
YEL052W AFG1_YEAST P32317 509 AFG1; AFG 2
YEL051W VATD_YEAST P32610 256 VMA8 SYGP-ORF11 1
YEL050C RML2_YEAST P32611 393 RML2 SYGP-ORF37 1
YEL050W-A YE050_YEAST P0C5M7 63 smORF167 6
YEL049W PAU2_YEAST P32612 120 PAU2 SYGP-ORF12 2
YEL048C YEF8_YEAST P32613 152 SYGP-ORF36
YEL047C FRDS_YEAST P32614 470 SYGP-ORF35 1
YEL046C GLY1_YEAST P37303 387 GLY1 SYGP-ORF34 2
YEL045C YEF5_YEAST P32616 141 SYGP-ORF33
YEL044W IES6_YEAST P32617 166 IES6 SYGP-ORF13 1
YEL043W YEF3_YEAST P32618 956 SYGP-ORF14
YEL042W GDA1_YEAST P32621 518 GDA1 SYGP-ORF16 1
YEL041W YEF1_YEAST P32622 495 SYGP-ORF17 3
YEL040W CRH2_YEAST P32623 467 UTR2; CHR2 SYGP-ORF18 2
YEL039C CYC7_YEAST P00045 113 CYC7; CYP3 1
YEL038W ENOPH_YEAST P32626 241 UTR4 SYGP-ORF20 1
YEL037C RAD23_YEAST P32628 398 RAD23 SYGP-ORF29 1
YEL036C ANP1_YEAST P32629 493 ANP1; GEM3 SYGP-ORF28 1
YEL035C UTR5_YEAST P32630 166 UTR5 SYGP-ORF27 2
YEL034W IF5A2_YEAST P23301 157 HYP2; TIF51A SYGP-ORF21 1
YEL034C-A YE034_YEAST Q02217 200 7
YEL033W YED3_YEAST P32633 139 SYGP-ORF22
YEL032W MCM3_YEAST P24279 971 MCM3 SYGP-ORF23 1
YEL032C-A YE032_YEAST Q8TGP4 53 6
YEL031W ATC6_YEAST P39986 1215 SPF1 1
YEL030W HSP7E_YEAST P39987 644 ECM10; SSC3 1
YEL030C-A YE030_YEAST Q8TGR5 104 6
YEL029C BUD16_YEAST P39988 312 BUD16 2
YEL028W YEC8_YEAST P39989 153 6
YEL027W VATL1_YEAST P25515 160 VMA3; CLS7; CUP5; GEF2 1
YEL026W SNU13_YEAST P39990 126 SNU13 1
YEL025C YEC5_YEAST P39991 1188
YEL024W UCRI_YEAST P08067 215 RIP1 1
YEL023C YEC3_YEAST P39992 682
YEL022W GEA2_YEAST P39993 1459 GEA2 1
YEL021W PYRF_YEAST P03962 267 URA3 1
YEL020C YEC0_YEAST P39994 560 3
YEL020W-A TIM9_YEAST O74700 87 TIM9 1
YEL020C-B YE020_YEAST P0C5M6 65 smORF171 6
YEL019C NSE2_YEAST P38632 267 MMS21; NSE2 1
YEL018W EAF5_YEAST P39995 279 EAF5 2
YEL017W GTT3_YEAST P39996 337 GTT3 2
YEL017C-A PMP2_YEAST P40975 43 PMP2 1
YEL016C NPP2_YEAST P39997 493 NPP2 1
YEL015W EDC3_YEAST P39998 551 EDC3; LSM16 1
YEL014C YEB4_YEAST P39999 101
YEL013W VAC8_YEAST P39968 578 VAC8 2
YEL012W UBC8_YEAST P28263 218 UBC8; GID3 1
YEL011W GLGB_YEAST P32775 704 GLC3 1
YEL010W YEB0_YEAST P40000 116
YEL009C GCN4_YEAST P03069 281 GCN4; ARG9; AAS3 1
YEL008W YEA8_YEAST P40001 126
YEL008C-A YE008_YEAST Q8TGP3 30 6
YEL007W YEA7_YEAST P40002 666 4
YEL006W YEA6_YEAST P39953 335 3
YEL005C VAB2_YEAST P40003 282 VAB2; VAB31
YEL004W YEA4_YEAST P40004 342 YEA4 1
YEL003W PFD2_YEAST P40005 111 GIM4; PFD2 1
YEL002C OSTB_YEAST P33767 430 WBP1 1
YEL001C YEA1_YEAST P40006 225
YER002W NOP16_YEAST P40007 231 NOP16 2
YER003C MPI_YEAST P29952 429 PMI40 1
YER004W FMP52_YEAST P40008 231 FMP52 2
YER005W YND1_YEAST P40009 630 YND1 1
YER006W NUG1_YEAST P40010 520 NUG1 1
YER007W PAC2_YEAST P39937 518 PAC2 2
YER007C-A TMA20_YEAST P89886 181 TMA20 2
YER008C SEC3_YEAST P33332 1336 SEC3; PSL1 2
YER009W NTF2_YEAST P33331 125 NTF2 1
YER010C YEK0_YEAST P40011 234
YER011W TIR1_YEAST P10863 254 TIR1; SRP1 2
YER012W PSB2_YEAST P22141 198 PRE1 1
YER013W PRP22_YEAST P24384 1145 PRP22 1
YER014W PPOX_YEAST P40012 539 HEM14 1
YER014C-A BUD25_YEAST P85052 153 BUD25 2
YER015W LCF2_YEAST P39518 744 FAA2; FAM1 1
YER016W BIM1_YEAST P40013 344 BIM1 2
YER017C AFG3_YEAST P39925 761 AFG3 2
YER018C SPC25_YEAST P40014 221 SPC25 2
YER019W ISC1_YEAST P40015 477 ISC1 1
YER019C-A SC6B2_YEAST P52871 88 SEB2; SBH2 1
YER020W GPA2_YEAST P10823 449 GPA2; SSP101 1
YER021W RPN3_YEAST P40016 523 RPN3; SUN2 1
YER022W MED17_YEAST P32569 687 SRB4; MED17 1
YER023W P5CR_YEAST P32263 286 PRO3; ORE2 1
YER023C-A YE023_YEAST Q8TGP2 70 6
YER024W YEL4_YEAST P40017 923 3
YER025W IF2G_YEAST P32481 527 GCD11; TIF213 1
YER026C PSS_YEAST P08456 276 CHO1; PSS1; PSS 1
YER027C GAL83_YEAST Q04739 417 GAL83; SPM1 2
YER028C MIG3_YEAST P39943 394 MIG3 1
YER029C RSMB_YEAST P40018 196 SMB1 1
YER030W CHZ1_YEAST P40019 153 CHZ1 1
YER031C YPT31_YEAST P38555 223 YPT31; YPT8 1
YER032W FIR1_YEAST P40020 876 FIR1; PIP1 1
YER033C ZRG8_YEAST P40021 1076 ZRG8 2
YER034W YEM4_YEAST P40022 185
YER035W EDC2_YEAST P40023 145 EDC2 1
YER036C ARB1_YEAST P40024 610 ARB1 2
YER037W PHM8_YEAST P40025 321 PHM8 2
YER038C KRE29_YEAST P40026 464 KRE29 1
YER039C GMT2_YEAST P40027 341 HVG1 3
YER040W GLN3_YEAST P18494 730 GLN3 1
YER041W YEN1_YEAST P40028 759
YER042W MSRA_YEAST P40029 184 MXR1 1
YER043C SAHH_YEAST P39954 449 SAH1 1
YER044C ERG28_YEAST P40030 148 ERG28; BUD18 1
YER044C-A MEI4_YEAST P29467 408 MEI4 2
YER045C YEN5_YEAST P39970 489 3
YER046W SPO73_YEAST P40031 143 SPO73 2
YER047C SAP1_YEAST P39955 897 SAP1 2
YER048C CAJ1_YEAST P39101 391 CAJ1 1
YER048W-A ISD11_YEAST Q6Q560 94 ISD11 2
YER049W TPA1_YEAST P40032 644 TPA1 2
YER050C RSM18_YEAST P40033 202 RSM18 1
YER051W JHD1_YEAST P40034 492 JHD1 1
YER052C AK_YEAST P10869 527 HOM3 1
YER053C PIC2_YEAST P40035 300 PIC2 1
YER053C-A YE053_YEAST Q3E7B0 37 6
YER054C GIP2_YEAST P40036 548 GIP2 2
YER055C HIS1_YEAST P00498 297 HIS1 1
YER056C FCY2_YEAST P17064 533 FCY2 1
YER056C-A RL34A_YEAST P87262 121 RPL34A 1
YER057C HMF1_YEAST P40037 129 HMF1; HIG1 2
YER058W PT117_YEAST Q02771 107 PET117 1
YER059W PCL6_YEAST P40038 420 PCL6 1
YER060W FCY21_YEAST P40039 528 FCY21; FCYY 1
YER060W-A FCY22_YEAST Q12119 530 FCY22; FCYX 1
YER061C CEM1_YEAST P39525 442 CEM1 1
YER062C GPP2_YEAST P40106 250 GPP2 1
YER063W THO1_YEAST P40040 218 THO1 2
YER064C YEP4_YEAST P40041 505
YER065C ACEA_YEAST P28240 557 ICL1 1
YER066W YEP6_YEAST P40042 185 3
YER066C-A YE066_YEAST P87263 166 7
YER067W YEP7_YEAST P40043 161 4
YER068W NOT4_YEAST P34909 587 NOT4; MOT2; SSF1; SIG1; CCL1 2
YER069W ARG56_YEAST Q01217 863 ARG5,6 1
YER070W RIR1_YEAST P21524 888 RNR1; CRT7; RIR1; SDS12 1
YER071C YEQ1_YEAST P40045 126
YER072W VTC1_YEAST P40046 129 VTC1; NRF1; PHM4 2
YER073W ALDH5_YEAST P40047 520 ALD5; ALDH5; ALD3 1
YER074W RS24_YEAST P26782 135 RPS24A; RPS24EA 1
YER074W-A YOS1_YEAST Q3E834 85 YOS1 1
YER075C PTP3_YEAST P40048 928 PTP3 1
YER076C YEQ6_YEAST P40049 302 3
YER077C YEQ7_YEAST P40050 688
YER078C YEQ8_YEAST P40051 511 3
YER078W-A YE078_YEAST Q3E7A2 54 6
YER079W YEQ9_YEAST P40052 210
YER080W YER0_YEAST P40053 627
YER081W SERA_YEAST P40054 469 SER3 1
YER082C UTP7_YEAST P40055 554 KRE31 2
YER083C GET2_YEAST P40056 285 GET2; HUR2; RMD7 1
YER084W YER4_YEAST P40057 128
YER085C YER5_YEAST P40058 173
YER086W THDH_YEAST P00927 576 ILV1 1
YER087W SYPM_YEAST P39965 576 3
YER087C-B SC6B1_YEAST P52870 82 SEB1; SBH1 1
YER088C DOT6_YEAST P40059 670 DOT6 2
YER088W-B YE088_YEAST Q8TGR4 48 YER088W-A 6
YER089C PP2C2_YEAST P39966 464 PTC2 1
YER090W TRPE_YEAST P00899 507 TRP2 1
YER090C-A YE090_YEAST P0C5M8 29 6
YER091C METE_YEAST P05694 767 MET6 1
YER091C-A YE091_YEAST Q02590 73 7
YER092W IES5_YEAST P40060 125 IES5 1
YER093C TSC11_YEAST P40061 1430 TSC11; AVO3 1
YER093C-A YES3A_YEAST P87275 137 6
YER094C PSB3_YEAST P25451 205 PUP3 1
YER095W RAD51_YEAST P25454 400 RAD51 1
YER096W SHC1_YEAST P39000 512 SHC1 2
YER097W YES7_YEAST P40062 109
YER098W UBP9_YEAST P39967 754 UBP9 1
YER099C KPR2_YEAST P38620 318 PRS2; PRPS2; PRS 1
YER100W UBC6_YEAST P33296 250 UBC6; DOA2 1
YER101C AST2_YEAST P39945 430 AST2 2
YER102W RS8_YEAST P05754 200 RPS8B; RPS14B 1
YER103W HSP74_YEAST P22202 642 SSA4 1
YER104W RT105_YEAST P40063 208 RTT105 2
YER105C NU157_YEAST P40064 1391 NUP157 1
YER106W MAM1_YEAST P40065 302 MAM1 1
YER107C GLE2_YEAST P40066 365 GLE2; RAE1 1
YER109C/ FLO8_YEAST P40068 799 FLO8; PDH5 2
108C
YER110C IMB4_YEAST P40069 1113 KAP123; YRB4 1
YER111C SWI4_YEAST P25302 1093 SWI4 1
YER112W LSM4_YEAST P40070 187 LSM4; USS1; SDB23 1
YER113C YEU3_YEAST P40071 706 3
YER114C BOI2_YEAST P39969 1040 BOI2; BEB1 2
YER115C SPR6_YEAST Q01684 191 SPR6 2
YER116C YEU6_YEAST P40072 274 3
YER117W RL23_YEAST P04451 137 RPL23B; RPL17AB; RPL17B 1
YER118C SSU81_YEAST P40073 367 SSU81 2
YER119C AVT6_YEAST P40074 448 AVT6 1
YER119C-A YE119_YEAST P87191 123 7
YER120W SCS2_YEAST P40075 244 SCS2 2
YER121W YEV1_YEAST P40076 114
YER122C GLO3_YEAST P38682 493 GLO3 2
YER123W KC13_YEAST P39962 524 YCK3; CKI3 1
YER124C DSE1_YEAST P40077 573 DSE1 SYGP-ORF48 2
YER125W RSP5_YEAST P39940 809 RSP5; NPI1; MDP1 SYGP-ORF41 1
YER126C NSA2_YEAST P40078 261 NSA2 SYGP-ORF47 2
YER127W LCP5_YEAST P40079 357 LCP5 SYGP-ORF43 1
YER128W YEV8_YEAST P40080 203 SYGP-ORF44
YER129W PAK1_YEAST P38990 1142 PAK1 SYGP-ORF45 1
YER130C YEW0_YEAST P39959 443 3
YER131W RS26B_YEAST P39939 119 RPS26B 1
YER132C PMD1_YEAST P32634 1753 PMD1 SYGP-ORF50 2
YER133W PP12_YEAST P32598 312 GLC7; DIS2; CID1 1
YER134C YEW4_YEAST P40081 178
YER135C YEW5_YEAST P40082 130
YER136W GDI1_YEAST P39958 451 GDI1; SEC19 1
YER137C YEW7_YEAST P40083 148
YER137C-A YD15A_YEAST Q12162 440 TY1A-ER1 YER138C-A 3
YERCTy1-1 GAG
YER138C YE11B_YEAST Q03612 1755 TY1B-ER1; YERCTy1-1 POL 3
YER138W-A YE38A_YEAST P0C270 34 4
YER139C RPAP2_YEAST P40084 226 3
YER140W TAPT1_YEAST P40085 556 4
YER141W COX15_YEAST P40086 486 COX15 1
YER142C MAG_YEAST P22134 296 MAG1; MAG 1
YER143W DDI1_YEAST P40087 428 DDI1; VSM1 1
YER144C UBP5_YEAST P39944 805 UBP5 1
YER145C FTR1_YEAST P40088 404 FTR1 1
YER146W LSM5_YEAST P40089 93 LSM5 1
YER147C SCC4_YEAST P40090 624 SCC4 2
YER148W TBP_YEAST P13393 240 SPT15; BTF1; TBP1 1
YER149C PEA2_YEAST P40091 420 PEA2; PPF2 2
YER150W YEY0_YEAST P40092 148 3
YER151C UBP3_YEAST Q01477 912 UBP3 1
YER152C YEY2_YEAST P10356 443
YER153C PT122_YEAST P10355 254 PET122 1
YER154W OXA1_YEAST P39952 402 OXA1; PET1402 2
YER155C BEM2_YEAST P39960 2167 BEM2; IPL2; SUP9 1
YER156C YEY6_YEAST P40093 338
YER157W COG3_YEAST P40094 801 COG3; GRD20; SEC34 1
YER158C YEY8_YEAST P40095 573 3
YER158W-A YE158_YEAST Q8TGR3 71 6
YER159C NCB1_YEAST P40096 142 BUR6; NCB1 1
YER159C-A YD14A_YEAST Q12231 440 TY1A-ER2 YER160C-A 3
YERCTy1-2 GAG
YER160C YE12B_YEAST Q03619 1755 TY1B-ER2; YERCTy1-2 POL 3
YER161C SPT2_YEAST P06843 333 SPT2; SPM2; SIN1 2
YER162C RAD4_YEAST P14736 754 RAD4 1
YER163C CHAC_YEAST P32656 232 SYGP-ORF3 2
YER164W CHD1_YEAST P32657 1468 CHD1 SYGP-ORF4 2
YER165W PABP_YEAST P04147 577 PAB1 1
YER166W ATC5_YEAST P32660 1571 DNF5 SYGP-ORF7 2
YER167W BCK2_YEAST P33306 851 BCK2; CTR7 2
YER168C CCA1_YEAST P21269 546 CCA1; TNT1 1
YER169W RPH1_YEAST P39956 796 RPH1 1
YER170W KAD2_YEAST P26364 225 ADK2; PAK3 1
YER171W RAD3_YEAST P06839 778 RAD3; REM1 1
YER172C BRR2_YEAST P32639 2163 BRR2; RSS1; SNU246 SYGP-ORF66 1
YER173W RAD24_YEAST P32641 659 RAD24 SYGP-ORF60 1
YER174C GLRX4_YEAST P32642 244 GRX4 SYGP-ORF64 1
YER175C TMT1_YEAST P32643 299 TMT1; TAM1 SYGP-ORF63 1
YER175W-A YE175_YEAST Q8TGU4 54 6
YER176W ECM32_YEAST P32644 1121 ECM32; HEL1; MTT1 SYGP-ORF61 1
YER177W BMH1_YEAST P29311 267 BMH1 1
YER178W ODPA_YEAST P16387 420 PDA1 1
YER179W DMC1_YEAST P25453 334 DMC1; ISC2 1
YER180C ISC10_YEAST P32645 267 ISC10 SYGP-ORF62 2
YER180C-A SLO1_YEAST Q3E784 85 SLO1 2
YER181C YE11_YEAST P40097 107
YER182W YE12_YEAST P40098 244
YER183C FTHC_YEAST P40099 211 FAU1 1
YER184C YE14_YEAST P39961 794 3
YER185W YE15_YEAST P40100 303 3
YER186C YE16_YEAST P40101 306
YER187W YE17_YEAST P40102 141 3
YER188W YE18_YEAST P40103 239
YER188C-A YE18A_YEAST P0C0V2 99 4
YER189W YE19_YEAST P40104 122 4
YER190W YRF12_YEAST P40105 1681 YRF1-2 2
YER190C-A YER90_YEAST Q8TFA6 191 6
YER190C-B YE190_YEAST Q8TFA4 160 4
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