yeast6.txt
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UniProt - Swiss-Prot Protein Knowledgebase
Swiss Institute of Bioinformatics (SIB); Geneva, Switzerland
European Bioinformatics Institute (EBI); Hinxton, United Kingdom
Protein Information Resource (PIR); Washington DC, USA
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Description: Yeast (Saccharomyces cerevisiae) chromosome 6 (VI): entries and
gene names
Name: yeast6.txt
Release: 55.5 of 10-Jun-2008
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Yeast chromosome VI open reading frames
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Reference for complete sequence:
RX [Pubmed: 7670463] [Article from publisher]
RA Murakami Y., Naitou M., Hagiwara H., Shibata T., Ozawa M.,
RA Sasanuma S., Sasanuma M., Tsuchiya Y., Soeda E., Yokoyama K.,
RA Yamazaki M., Tashiro H., Eki T.;
RT "Analysis of the nucleotide sequence of chromosome VI from
RT Saccharomyces cerevisiae.";
RL Nat. Genet. 10:261-268(1995).
Size of CHRVI: 271 Kb
Total number of ORFs currently in Swiss-Prot: 139
=====================
ORF code nomenclature
=====================
YX[L|R]ddd[w|c]
Y = Yeast
X = Letter representing the chromosome (in this case X is 'F' for CHRVI)
L | R = 'L' is for Left arm; 'R' is for Right arm
ddd = ORF number on the left or right arm
c | w = 'c' is for complementary strand; 'w' is for Watson strand
==================
Categories of ORFs
==================
1: genetically and biochemically characterized
2: genetically characterized, but exact function not known
3: high similarity to a protein of characterized function
4: high similarity to a protein of uncharacterized function
5: low similarity to an existing protein
6: no known similarity (temporary assignment)
7: probable non-expressed ORF
__________ __________ ______ ____ ___________________ ________________ ____
ORF Swiss-Prot Size Gene name and ORF code Cat.
code entry name AC a.a. synonyms synonyms
__________ __________ ______ ____ ___________________ ________________ ____
YFL068W YFG8_YEAST P43536 160 6
YFL067W YFG7_YEAST P43537 175 6
YFL066C YFG6_YEAST P43538 392 3
YFL065C YFG5_YEAST P43539 102 4
YFL064C YFG4_YEAST P43540 174 4
YFL063W YFG3_YEAST P43541 151 4
YFL062W COS4_YEAST P43542 379 COS4 2
YFL061W YFG1_YEAST P43543 225 3
YFL060C SNO3_YEAST P43544 222 SNO3 2
YFL059W SNZ3_YEAST P43545 298 SNZ3 2
YFL058W THI5_YEAST P43534 340 THI5 2
YFL057C AAD16_YEAST P43546 152 AAD16 2
YFL056C AAD6_YEAST P43547 212 AAD6 2
YFL055W AGP3_YEAST P43548 558 AGP3 1
YFL054C YFF4_YEAST P43549 646 3
YFL053W DAK2_YEAST P43550 591 DAK2 1
YFL052W YFF2_YEAST P43551 465 3
YFL051C YFF1_YEAST P43552 160 4
YFL050C ALR2_YEAST P43553 858 ALR2 2
YFL049W SWP82_YEAST P43554 623 SWP82 2
YFL048C EMP47_YEAST P43555 445 EMP47 2
YFL047W RGD2_YEAST P43556 714 RGD2 1
YFL046W FMP32_YEAST P43557 207 FMP32 2
YFL045C PMM_YEAST P07283 254 SEC53; ALG4 1
YFL044C OTU1_YEAST P43558 301 OTU1 2
YFL042C YFE2_YEAST P43560 674 4
YFL041W FET5_YEAST P43561 622 FET5 1
YFL041W-A YF041_YEAST Q3E817 63 6
YFL040W YFE0_YEAST P43562 540 3
YFL039C ACT_YEAST P60010 375 ACT1; ABY1; END7 1
YFL038C YPT1_YEAST P01123 206 YPT1; YP2 1
YFL037W TBB_YEAST P02557 457 TUB2 1
YFL036W RPOM_YEAST P13433 1351 RPO41 1
YFL034W YFD4_YEAST P43564 1073 6
YFL034C-A RL22B_YEAST P56628 122 RPL22B 1
YFL034C-B MOB2_YEAST P43563 287 MOB2 YFL035C; YFL035C-A 1
YFL033C RIM15_YEAST P43565 1770 RIM15; TAK1 1
YFL032W YFD2_YEAST P43566 106 6
YFL031W HAC1_YEAST P41546 238 HAC1; ERN4; IRE15; IRE2 1
YFL031C-A YF030_YEAST Q8TGU3 33 YFL030C-A 6
YFL030W AGX1_YEAST P43567 385 AGX1 1
YFL029C CAK1_YEAST P43568 368 CAK1; CIV1 1
YFL028C YFC8_YEAST P43569 289 3
YFL027C GYP8_YEAST P43570 497 GYP8 1
YFL026W STE2_YEAST P06842 431 STE2 1
YFL025C BST1_YEAST P43571 1029 BST1 1
YFL024C EPL1_YEAST P43572 832 EPL1 2
YFL023W BUD27_YEAST P43573 796 BUD27; URI 2
YFL022C SYFA_YEAST P15625 503 FRS2 1
YFL021W GAT1_YEAST P43574 510 GAT1 1
YFL020C PAU5_YEAST P43575 122 PAU5 2
YFL019C YFB9_YEAST P43576 117 6
YFL018C DLDH_YEAST P09624 499 LPD1; DHLP1 1
YFL017C GNA1_YEAST P43577 159 GNA1; PAT1 1
YFL017W-A RUXG_YEAST P40204 77 SMX2; SNP2 1
YFL016C MDJ1_YEAST P35191 511 MDJ1 1
YFL015C YFB5_YEAST P43578 164 6
YFL014W HSP12_YEAST P22943 109 HSP12; GLP1 2
YFL013C IES1_YEAST P43579 692 IES1 2
YFL013W-A YF013_YEAST Q03187 267 7
YFL012W YFB2_YEAST P43580 148 6
YFL012W-A YFL12_YEAST Q03186 124 7
YFL011W HXT10_YEAST P43581 546 HXT10 1
YFL010C YFB0_YEAST P43582 211 6
YFL010W-A AUA1_YEAST P32450 94 AUA1 2
YFL009W CDC4_YEAST P07834 779 CDC4 2
YFL008W SMC1_YEAST P32908 1225 SMC1; CHL10 2
YFL007W/ BLM10_YEAST P43583 2143 BLM10; BLM3 2
006W
YFL005W SEC4_YEAST P07560 215 SEC4; SRO6 1
YFL004W VTC2_YEAST P43585 828 VTC2; PHM1 1
YFL003C MSH4_YEAST P40965 878 MSH4 1
YFL002C SPB4_YEAST P25808 606 SPB4 2
YFL002W-A YF21B_YEAST Q12503 1770 TY2B-F FN01 3
YFLWTy2-1 POL
YFL002W-B YF21A_YEAST Q99195 438 TY2A-F F006 3
YFLWTy2-1 GAG
YFL001W PUS3_YEAST P31115 442 PUS3; DEG1 1
YFR001W LOC1_YEAST P43586 204 LOC1 2
YFR002W NIC96_YEAST P34077 839 NIC96 2
YFR003C YPI1_YEAST P43587 155 YPI1 2
YFR004W RPN11_YEAST P43588 306 RPN11; MPR1 1
YFR005C SAD1_YEAST P43589 448 SAD1 1
YFR006W YFH6_YEAST P43590 535 3
YFR007W YFH7_YEAST P43591 353 6
YFR008W FAR7_YEAST P43592 221 FAR7 1
YFR009W GCN20_YEAST P43535 752 GCN20 1
YFR009W-A YF009_YEAST P0C5M9 85 6
YFR010W UBP6_YEAST P43593 499 UBP6 1
YFR010W-A YF010_YEAST P0C5N0 62 6
YFR011C YFI1_YEAST P43594 170 6
YFR012W YFI2_YEAST P43595 202 6
YFR012W-A YF012_YEAST Q3E838 28 6
YFR013W IOC3_YEAST P43596 787 IOC3 2
YFR014C KCC1_YEAST P27466 446 CMK1 1
YFR015C GYS1_YEAST P23337 708 GSY1 1
YFR016C YFI6_YEAST P43597 1233 5
YFR017C YFI7_YEAST P43598 195 6
YFR018C YFI8_YEAST P43599 363 3
YFR019W FAB1_YEAST P34756 2278 FAB1 2
YFR020W YFJ0_YEAST P43600 232 6
YFR021W ATG18_YEAST P43601 500 AUT10; CVT18; NMR1; SVP1 1
YFR022W ROG3_YEAST P43602 733 RGO3 2
YFR023W PES4_YEAST P39684 611 PES4 2
YFR024C-A LSB3_YEAST P43603 451 LSB3 YFR024C 1
YFR025C HIS9_YEAST P38635 335 HIS2 1
YFR026C YFJ6_YEAST P43604 169 6
YFR027W ECO1_YEAST P43605 281 ECO1; CTF7 1
YFR028C CDC14_YEAST Q00684 551 CDC14; OAF3 1
YFR029W PTR3_YEAST P43606 678 PTR3; SSY3 2
YFR030W MET10_YEAST P39692 1035 MET10 1
YFR031C SMC2_YEAST P38989 1170 SMC2 2
YFR031C-A RL2_YEAST P05736 254 RPL2A; RPL5B 1
YFR032C YFK2_YEAST P43607 289 6
YFR032C-A RL29_YEAST P05747 59 RPL29; YL43 1
YFR032C-B YF032_YEAST Q8TGU2 87 6
YFR033C QCR6_YEAST P00127 147 QCR6; UCR6 1
YFR034C PHO4_YEAST P07270 312 PHO4 1
YFR034W-A YF034_YEAST Q8TGR2 95 6
YFR035C YFK5_YEAST P43608 114 6
YFR036W CDC26_YEAST P14724 124 CDC26; SCD26; HIT3 1
YFR037C RSC8_YEAST P43609 557 RSC8; SWH3 1
YFR038W YFK8_YEAST P43610 853 3
YFR039C YFK9_YEAST P43611 510 4
YFR040W SA155_YEAST P43612 1002 SAP155 1
YFR041C YFL1_YEAST P43613 295 3
YFR042W YFL2_YEAST P43614 200 6
YFR043C YFL3_YEAST P43615 237 6
YFR044C CPGL_YEAST P43616 481 2
YFR045W YFL5_YEAST P43617 285 3
YFR046C CNN1_YEAST P43618 361 CNN1 2
YFR047C NADC_YEAST P43619 295 BNA6; QPT1 1
YFR048W RMD8_YEAST P43620 662 RMD8 2
YFR049W RT31_YEAST P19955 123 YMR31 1
YFR050C PSB4_YEAST P30657 266 PRE4 1
YFR051C COPD_YEAST P43621 546 RET2 1
YFR052W RPN12_YEAST P32496 274 RPN12; NIN1 1
YFR053C HXKA_YEAST P04806 485 HXK1; HKA 1
YFR054C YFM4_YEAST P43622 192 6
YFR055W METC_YEAST P43623 340 3
YFR056C YFM6_YEAST P43624 122 6
YFR057W YFM7_YEAST P43625 151 6
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