Reviewed, UniProtKB/Swiss-Prot A3B6V0 (WOX12_ORYSJ)

Names and origin

Protein names

Recommended name:
    WUSCHEL-related homeobox 12
Alternative name(s):
    OsWOX12
    Protein WOX9C

Gene names

Name:	WOX12
Ordered Locus Names:	Os05g0564500, LOC_Os05g48990
ORF Names:	OSJNBb0053D02.14, OsJ_018772

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	515 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Function	Transcription factor which may be involved in developmental processes By similarity.
Subcellular location	NucleusBy similarity.
Sequence similarities	Belongs to the WUS homeobox family. Contains 1 homeobox DNA-binding domain.
Sequence caution	AAT77402.1 sequence differs from that shown. Reason: Erroneous gene model prediction. EAZ35289.1 sequence differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Domain	Homeobox
Ligand	DNA-binding
Molecular function	Developmental protein
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view
Molecule processing
	Chain	1 – 515	515	WUSCHEL-related homeobox 12
Regions
	DNA binding	68 – 132	65	Homeobox; WUS-type
	Compositional bias	181 – 196	16	Ser-rich

Sequences

	Sequence		Length	Mass (Da)
	A3B6V0-1 [UniParc]. Last modified October 23, 2007. Version 2. Checksum: 9BCF56F0994359A6	FASTA	515	54,610
	10 20 30 40 50 60 MASPNRHWPS MFRSNLACNI QQQQQPDMNG NGSSSSSFLL SPPTAATTGN GKPSLLSSGC 70 80 90 100 110 120 EEGTRNPEPK PRWNPRPEQI RILEGIFNSG MVNPPRDEIR RIRLQLQEYG QVGDANVFYW 130 140 150 160 170 180 FQNRKSRTKN KLRAAGHHHH HGRAAALPRA SAPPSTNIVL PSAAAAAPLT PPRRHLLAAT 190 200 210 220 230 240 SSSSSSSDRS SGSSKSVKPA AAALLTSAAI DLFSPAPAPT TQLPACQLYY HSHPTPLARD 250 260 270 280 290 300 DQLITSPESS SLLLQWPASQ YMPATELGGV LGSSSHTQTP AAITTHPSTI SPSVLLGLCN 310 320 330 340 350 360 EALGQHQQET MDDMMITCSN PSKVFDHHSM DDMSCTDAVS AVNRDDEKAR LGLLHYGIGV 370 380 390 400 410 420 TAAANPAPHH HHHHHHLASP VHDAVSAADA STAAMILPFT TTAAATPSNV VATSSALADQ 430 440 450 460 470 480 LQGLLDAGLL QGGAAPPPPS ATVVAVSRDD ETMCTKTTSY SFPATMHLNV KMFGEAAVLV 490 500 510 RYSGEPVLVD DSGVTVEPLQ QGATYYVLVS EEAVH

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"A fine physical map of the rice chromosome 5." Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J., Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F., Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y. Mol. Genet. Genomics 274:337-345(2005) [PubMed: 16261349] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The genomes of Oryza sativa: a history of duplications." Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H. PLoS Biol. 3:266-281(2005) [PubMed: 15685292] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"The shoot stem cell niche in angiosperms: expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution." Nardmann J., Werr W. Mol. Biol. Evol. 23:2492-2504(2006) [PubMed: 16987950] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 68-132.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AC124143 Genomic DNA. Translation: AAT77402.1. Sequence problems. CM000142 Genomic DNA. Translation: EAZ35289.1. Sequence problems. AM234753 mRNA. Translation: CAJ84145.1.
3D structure databases
ModBase	Search...
Organism-specific databases
Gramene	Q6AUF7.
Family and domain databases
InterPro	IPR001356. Homeobox. [Graphical view]
Pfam	PF00046. Homeobox. 1 hit. [Graphical view]
SMART	SM00389. HOX. 1 hit. [Graphical view]
PROSITE	PS00027. HOMEOBOX_1. False negative. PS50071. HOMEOBOX_2. 1 hit. [Graphical view]
ProDom	A3B6V0. [Graphical view] [Entries sharing at least one domain]
BLOCKS	Search...
Other Resources
ProtoNet	Search...

Entry information

Entry name

WOX12_ORYSJ

Accession

Primary (citable) accession number: A3B6V0
Secondary accession number(s): A0AAT4, Q6AUF7

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 23, 2007
Last sequence update:	October 23, 2007
Last modified:	July 22, 2008
This is version 11 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)