Unreviewed, UniProtKB/TrEMBL O00835 (O00835_DICDI)

Names and origin

Protein names

Submitted name:
    RepB (Transcription factor IIH subunit) EMBL AAB62732.1

Gene names

Name:	repB EMBL AAB62732.1
ORF Names:	DDB_0214830 EMBL EAL67966.1

Organism

Dictyostelium discoideum (Slime mold) [Complete proteome] EMBL AAB62732.1

Taxonomic identifier

44689 [NCBI]

Taxonomic lineage

Eukaryota › Mycetozoa › Dictyosteliida › Dictyostelium

Protein attributes

Sequence length	800 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Predicted.

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	UV protection Inferred from mutant phenotype. Source: dictyBase nucleotide-excision repair Inferred from electronic annotation. Source: InterPro response to DNA damage stimulus Inferred from expression pattern. Source: dictyBase
Cellular component	nucleus Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: InterPro ATP-dependent DNA helicase activity Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O00835-1 [UniParc]. Last modified July 1, 1997. Version 1. Checksum: 0DB636E33067B09A	FASTA	800	90,257
	10 20 30 40 50 60 MSSGDSNLKR RRGGNTGQSS KSYNTWTDYE EDLEESGEFN QSIKKTTNTS SATLTSSEEK 70 80 90 100 110 120 GSLLDYSKRC ILKQDNKSRP IWVCPDGHIF LETFSAIYKQ ASDFLVAIAE PVCRPQNIHE 130 140 150 160 170 180 YQLTPYSLYA AVSVGLETND IITVLGRLSK LALPKEVEQF VRQCTQSYGK VKLVLQKNKY 190 200 210 220 230 240 FVESAYPEVL EFLLKDSSIA TARIKPTLEE SVVDPKTGFI INKEVVTGAQ ISGGLQANQS 250 260 270 280 290 300 LDPVLKNDAL SNLLEEEEED TVNNSDQHFH SFEIDPQQVE EVKKRCIQLD YPVLEEYDFR 310 320 330 340 350 360 NDTVNPNLNI DLKPTTMIRP YQEKSLSKMF GNGRARSGII VLPCGAGKSL SGITAACTVK 370 380 390 400 410 420 KSILVLCTSA VSVEQWKYQF KLWSNIEERQ ISKFTSDNKE KISNVAGVTI TTYTMVAFGG 430 440 450 460 470 480 RRSAESLKIM NEITNREWGL VLLDEVHVVP AAMFRKVLTV TKAHCKLGLT ATLLREDEKI 490 500 510 520 530 540 QDLNFLIGPK LYEANWLDLQ KAGFLANVSC SEVWCPMTAE FYKEYLINDS QGKKKLLYTM 550 560 570 580 590 600 NPNKFRACEY LIRFHEQRGD KIIVFSDNVY ALQKYAKGLG RYFIYGPTSG HERMSILSKF 610 620 630 640 650 660 QHDPTVRTIF ISKVGDTSID IPEATVIIQV SSHYGSRRQE AQRLGRILRP KPKSDGLYNA 670 680 690 700 710 720 FFYSLVSKDT QEMYYSTKRQ QFLIDQGYSF KVISELPGID QEVNLKYSSK QDQLDLLAQV 730 740 750 760 770 780 LGEGEDSGKN EILEEDFDDI TRGAKKSKSS APTVSRTTGG STRALSGGND MNYMEYQAPA 790 800 IYKSIPTQHA LFKQRAKNKQ

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Differential developmental expression of the rep B and rep D xeroderma pigmentosum related DNA helicase genes from Dictyostelium discoideum." Lee S.-K., Yu S.-L., Garcia M.X., Alexander H., Alexander S. Nucleic Acids Res. 25:2365-2374(1997) [PubMed: 9171087] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: RC3 EMBL AAB62732.1.
[2]	Lee S.-K., Yu S.-L., Garcia M.X.U., Alexander S., Alexander H. Submitted (NOV-1996) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: RC3 EMBL AAB62732.1.
[3]	"The genome of the social amoeba Dictyostelium discoideum." Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.A., Sucgang R., Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B., Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T., Lehmann R., Hamlin N. , Davies R., Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E.J., Davis P., Kerhornou A., Nie X., Hall N., Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E., Morio T., Rost R., Churcher C.M., Cooper J., Haydock S., van Driessche N., Cronin A., Goodhead I., Muzny D.M., Mourier T., Pain A., Lu M., Harper D., Lindsay R., Hauser H., James K.D., Quiles M., Madan Babu M., Saito T., Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D., Knights A., Loulseged H., Mungall K.L., Oliver K., Price C., Quail M.A., Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Ma J., Kohara Y., Sharp S., Simmonds M.N., Spiegler S., Tivey A., Sugano S., White B., Walker D., Woodward J.R., Winckler T., Tanaka Y., Shaulsky G., Schleicher M., Weinstock G.M., Rosenthal A., Cox E.C., Chisholm R.L., Gibbs R.A., Loomis W.F., Platzer M., Kay R.R., Williams J.G., Dear P.H., Noegel A.A., Barrell B.G., Kuspa A. Nature 435:43-57(2005) [PubMed: 15875012] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: AX4.

Cross-references

Sequence databases
EMBLGenBankDDBJ	U77065 Genomic DNA. Translation: AAB62732.1. AAFI02000024 Genomic DNA. Translation: EAL67966.1.
RefSeq	XP_647819.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	3393043.
KEGG	ddi:DDB_0214830.
Organism-specific databases
dictyBase	DDB0214830. repB.
Family and domain databases
InterPro	IPR014001. DEAD-like_N. IPR001650. DNA/RNA_helicase_C. IPR014021. Helicase_SF1/SF2_ATP-bd. IPR006935. Restrct_endonuc_I_R/III_Res. IPR001005. SANT_DNA-bd. IPR001161. XPGB_DNA_repair. [Graphical view]
Pfam	PF00271. Helicase_C. 1 hit. PF04851. ResIII. 1 hit. [Graphical view]
PRINTS	PR00851. XRODRMPGMNTB.
SMART	SM00487. DEXDc. 1 hit. SM00490. HELICc. 1 hit. [Graphical view]
TIGRFAMs	TIGR00603. rad25. 1 hit.
PROSITE	PS51192. HELICASE_ATP_BIND_1. 1 hit. PS51194. HELICASE_CTER. 1 hit. PS00037. MYB_1. 1 hit. Uncertain. [Graphical view]
ProDom	O00835. [Graphical view] [Entries sharing at least one domain]

Entry information

Entry name

O00835_DICDI

Accession

Primary (citable) accession number: O00835
Secondary accession number(s): Q54XI4

Entry history

Integrated into UniProtKB/TrEMBL:	July 1, 1997
Last sequence update:	July 1, 1997
Last modified:	July 22, 2008
This is version 60 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)