Reviewed, UniProtKB/Swiss-Prot O06993 (YVDK_BACSU)

Names and origin

Protein names

Recommended name:
    Uncharacterized glycosyl hydrolase yvdK
    EC=3.2.1.-

Gene names

Name:	yvdK
Ordered Locus Names:	BSU34570

Organism

Bacillus subtilis [Complete proteome] [HAMAP]

Taxonomic identifier

1423 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

Protein attributes

Sequence length	757 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 65 family.

Ontologies

Keywords
Molecular function	Glycosidase Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro hydrolase activity, acting on glycosyl bonds Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 757	757	Uncharacterized glycosyl hydrolase yvdK		PRO_0000108018

Sequences

	Sequence		Length	Mass (Da)
	O06993-1 [UniParc]. Last modified July 1, 1997. Version 1. Checksum: 75B3ECE933850F29	FASTA	757	88,279
	10 20 30 40 50 60 MINQRLFEID EWKIKTNTFN KEHTRLLESL TSLANGYMGV RGNFEEGYSG DSHQGTYIAG 70 80 90 100 110 120 VWFPDKTRVG WWKNGYPEYF GKVINAMNFM GIGLYVDGEK IDLHQNPIEL FEVELNMKEG 130 140 150 160 170 180 ILRRSAVVRI QDKTVRIRSE RFLSLAVKEL CAIHYEAECL TGDAVITLVP YLDGNVANED 190 200 210 220 230 240 SNYQEQFWQE EAKGADSHSG HLAAKTIENP FGTPRFTVLA AMANETEGFV HESFKTTEMY 250 260 270 280 290 300 VENRYSYQTK ASLKKFVIVT TSRDFREEEL LSKAKELLAD VVENGYEDAK RRHTDRWKER 310 320 330 340 350 360 WAKADIEIKG DEELQQGIRY NIFQLFSTYY GGDARLNIGP KGFTGEKYGG AAYWDTEAYA 370 380 390 400 410 420 VPMYLATAEP EVTKNLLLYR YHQLEAAKRN AAKLGMKGAL YPMVTFTGDE CHNEWEITFE 430 440 450 460 470 480 EIHRNGAICY AIYNYINYTG DRNYMEEYGI DVLVAVSRFW ADRVHFSKRK NKYMIHGVTG 490 500 510 520 530 540 PNEYENNVNN NWYTNVIAAW TLEYTLQSLE SISAEKRRHL DVQEVELEVW REIIQHMYYP 550 560 570 580 590 600 FSEELQIFVQ HDTFLDKDLQ TVDELDPAER PLYQNWSWDK ILRSNFIKQA DVLQGIYLFN 610 620 630 640 650 660 DRFTMEEKRR NFEFYEPMTV HESSLSPSVH AILAAELKLE KKALELYKRT ARLDLDNYNH 670 680 690 700 710 720 DTEEGLHITS MTGSWLAIVH GFAGMRTANE TLSFAPFLPK EWDEYSFNIN YRNRLINVTV 730 740 750 DEKRVIFELV KGEPLHMNVY EEPVVLQGRC ERRTPNE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	Denizot F. Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: 168.
[2]	"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis." Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A. Nature 390:249-256(1997) [PubMed: 9384377] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 168.

Cross-references

Sequence databases
EMBLGenBankDDBJ	Z94043 Genomic DNA. Translation: CAB08040.1. Z99121 Genomic DNA. Translation: CAB15462.1.
PIR	C70034.
RefSeq	NP_391337.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	938621.
GenomeReviews	Gene locus BSU34570 in contig AL009126_GR.
KEGG	bsu:BSU34570.
NMPDR	fig|224308.1.peg.3463.
Organism-specific databases
SubtiList	BG12420. yvdK. [Micado]
CMR	Search...
Phylogenomic databases
HOGENOM	O06993.
Enzyme and pathway databases
BioCyc	BSUB224308:BSU3454-MON.
Family and domain databases
InterPro	IPR012341. 6hp_glycosidase. IPR005194. Glyco_hydro_65_C. IPR005195. Glyco_hydro_65_M. IPR005196. Glyco_hydro_65_N. IPR017045. Malt_Pase/Glycosyl_OHase. [Graphical view]
Gene3D	G3DSA:1.50.10.10. CelA/Cel48F_cat. 1 hit. G3DSA:2.70.98.40. Glyco_hydro_65_N. 1 hit.
Pfam	PF03633. Glyco_hydro_65C. 1 hit. PF03632. Glyco_hydro_65m. 1 hit. PF03636. Glyco_hydro_65N. 1 hit. [Graphical view]
PIRSF	PIRSF036289. Glycosyl_hydrolase_malt_phosph. 1 hit.
ProtoNet	Search...

Entry information

Entry name

YVDK_BACSU

Accession

Primary (citable) accession number: O06993

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 15, 1998
Last sequence update:	July 1, 1997
Last modified:	November 25, 2008
This is version 58 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)