Unreviewed, UniProtKB/TrEMBL O22179 (O22179_ARATH)

Names and origin

Protein names

Submitted name:
    MYB family transcription factor (MYB transcription factor) (At2g23280) EMBL AAB87103.1

Gene names

Ordered Locus Names:

At2g23290 EMBL AAB87103.1 TAIR At2g23290

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	309 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities

Contains 2 HTH myb-type DNA-binding domains. RuleBase RU003520V0

Ontologies

Keywords
Cellular component	Nucleus Spearmint SPM001005
Domain	Repeat Spearmint SPM001005
Ligand	DNA-binding Spearmint SPM001005
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	response to cadmium ion Inferred from expression pattern. Source: TAIR response to salt stress Inferred from expression pattern. Source: TAIR
Molecular function	protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
	Q2V412	1	EBI-1238013,EBI-1238781
CALM	P62157	1	EBI-1238013,EBI-397403	From a different organism.
CAM1	P25854	1	EBI-1238013,EBI-1235664
CAM6	Q03509	1	EBI-1238013,EBI-1236097
CAM7	P59220	1	EBI-1238013,EBI-1236031
CML10	P30187	1	EBI-1238013,EBI-1238722
CML8	O23320	1	EBI-1238013,EBI-1237764
CML9	Q9S744	1	EBI-1238013,EBI-1236048

Sequences

	Sequence		Length	Mass (Da)
	O22179-1 [UniParc]. Last modified January 1, 1998. Version 1. Checksum: 04BB12FDB7826F2B	FASTA	309	33,229
	10 20 30 40 50 60 MSGSTRKEMD RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS 70 80 90 100 110 120 PEVEHRGFTA EEDDTIILAH ARFGNKWATI ARLLNGRTDN AIKNHWNSTL KRKCSGGGGG 130 140 150 160 170 180 GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP 190 200 210 220 230 240 VSSSCHVFKP TARAGGVVIE SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE 250 260 270 280 290 300 EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR EFIGLGRIE

References

[1]	Rounsley S.D., Lin X., Ketchum K.A., Crosby M.L., Brandon R.C., Sykes S.M., Kaul S., Mason T.M., Kerlavage A.R., Adams M.D., Somerville C.R., Venter J.C. Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[2]	Town C.D., Kaul S. Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	"The MYB Transcription Factor Family in Arabidopsis: A Genome-Wide Cloning and Expression Pattern Analysis." Qu L., Gu H. Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[4]	"Arabidopsis ORF clones." Kim C.J., Chen H., Cheuk R., Shinn P., Bowser L., Carninci P., Dale J.M., Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lin J., Miranda M., Narusaka M. , Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[5]	"Arabidopsis thaliana full-length cDNA." Seki M., Iida K., Satou M., Sakurai T., Akiyama K., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K. Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AC002391 Genomic DNA. Translation: AAB87103.1. BT008343 mRNA. Translation: AAP37702.1. AY519574 mRNA. Translation: AAS10044.1. AK117263 mRNA. Translation: BAC41938.1.
PIR	T00503.
RefSeq	NP_179910.1.
UniGene	At.28681
3D structure databases
HSSP	HSSP built from PDB template 1MBK based on UniProtKB P06876.
ModBase	Search...
Protein-protein interaction databases
IntAct	O22179. 8 interactions.
Genome annotation databases
GeneID	816861.
GenomeReviews	Gene locus AT2G23290 in contig CT485783_GR.
KEGG	ath:AT2G23290.
NMPDR	fig|3702.1.peg.28949.
Organism-specific databases
TAIR	At2g23290.
Gene expression databases
ArrayExpress	O22179.
Family and domain databases
InterPro	IPR012287. Homeodomain-rel. IPR017930. Myb-type_HTH. IPR014778. Myb_DNA-bd. IPR015495. Myb_trans_fac. IPR001005. SANT_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.60. Homeodomain-rel. 2 hits.
PANTHER	PTHR10641. Myb_transfac. 1 hit.
Pfam	PF00249. Myb_DNA-binding. 2 hits. [Graphical view]
SMART	SM00717. SANT. 2 hits. [Graphical view]
PROSITE	PS51294. HTH_MYB. 2 hits. [Graphical view]

Entry information

Entry name

O22179_ARATH

Accession

Primary (citable) accession number: O22179

Entry history

Integrated into UniProtKB/TrEMBL:	January 1, 1998
Last sequence update:	January 1, 1998
Last modified:	December 16, 2008
This is version 65 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)