UPF0082 protein HP_0162 - Helicobacter pylori

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Reviewed, UniProtKB/Swiss-Prot O24970 (Y162_HELPY)

Last modified July 22, 2008. Version 55. History...

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein names

Recommended name:
UPF0082 protein HP_0162

Gene names

Ordered Locus Names:

HP_0162

Organism

Helicobacter pylori (Campylobacter pylori) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Epsilonproteobacteria › Campylobacterales › Helicobacteraceae › Helicobacter

Protein attributes

Sequence length	240 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities

Belongs to the UPF0082 family.

Ontologies

Keywords
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

240

UPF0082 protein HP_0162 HAMAP MF_00693

PRO_0000175820

Secondary structure

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240

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

O24970-1 [UniParc].

Last modified January 1, 1998. Version 1.
Checksum: 6BB7E0DC87B35F2E
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240

27,127

        10         20         30         40         50         60 
MGRAFEYRRA AKEKRWDKMS KVFPKLAKAI TLAAKDGGSE PDTNAKLRTA ILNAKAQNMP 

        70         80         90        100        110        120 
KDNIDAAIKR ASSKEGNLSE ITYEGKANFG VLIIMECMTD NPTRTIANLK SYFNKTQGAS 

       130        140        150        160        170        180 
IVPNGSLEFM FNRKSVFECL KNEVENLKLS LEDLEFALID YGLEELEEVE DKIIIRGDYN 

       190        200        210        220        230        240 
SFKLLNEGFE SLKLPILKAS LQRIATTPIE LNDEQMELTE KLLDRIEDDD DVVALYTNIE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The complete genome sequence of the gastric pathogen Helicobacter pylori." Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J. Venter J.C. Nature 388:539-547(1997) [PubMed: 9252185] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700392 / 26695.
[2]	Kuzin A., Shen J., Keller J.P., Xiao R., Rost B., Montelione G., Hunt J.F. Submitted (SEP-2002) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS).

Cross-references

Sequence databases

AE000511 Genomic DNA. Translation: AAD07231.1.

PIR

RefSeq

3D structure databases

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1MHF	model	-	A	1-240	[»]
1MW7	X-ray	2.00	A	1-240	[»]

ModBase

Protein-protein interaction databases

DIP

Genome annotation databases

GeneID

GenomeReviews

Gene locus HP_0162 in contig AE000511_GR.

KEGG

NMPDR

fig|85962.1.peg.159.

TIGR

Phylogenomic databases

HOGENOM

Family and domain databases

HAMAP

MF_00693.
[Tree]

InterPro

IPR002876. DUF28.
IPR017856. Integrase_Zn-bd_dom-like_N.
[Graphical view]

Gene3D

G3DSA:1.10.10.200. Intgrase_N_Zn_bd. 1 hit.

PANTHER

PTHR12532. DUF28. 1 hit.

Pfam

PF01709. DUF28. 1 hit.
[Graphical view]

ProDom

PD004323. DUF28. 1 hit.
[Graphical view] [Entries sharing at least one domain]

TIGRFAMs

TIGR01033. DUF28. 1 hit.

ProtoNet

Other Resources

LinkHub

Entry information

Entry name

Y162_HELPY

Accession

Primary (citable) accession number: O24970

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 30, 2000
Last sequence update:	January 1, 1998
Last modified:	July 22, 2008
This is version 55 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Helicobacter pylori

Helicobacter pylori (strain 26695): entries and gene names

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents