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Reviewed, UniProtKB/Swiss-Prot O75643 (U520_HUMAN)

Last modified December 16, 2008. Version 92. Feed History...

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    U5 small nuclear ribonucleoprotein 200 kDa helicase
    EC=3.6.1.-
Alternative name(s):
    U5 snRNP-specific 200 kDa protein
      Short name=U5-200KD
    Activating signal cointegrator 1 complex subunit 3-like 1
    BRR2 homolog
Gene names
Name: ASCC3L1
Synonyms: HELIC2, KIAA0788
OrganismHomo sapiens (Human)
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length2136 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

Putative RNA helicase involved in the second step of RNA splicing. May promote one or more conformational changes in the dynamic network of RNA-RNA interactions in the spliceosome. Appears to catalyze an ATP-dependent unwinding of U4/U6 RNA duplices. Ref.7

Subunit structure

U5 snRNP contains nine specific proteins with molecular weights of 40, 52, 100, 102, 110, 116, 200 and 220 kDa. Identified in the spliceosome C complex, at least composed of AQR, ASCC3L1, C19orf29, CDC40, CDC5L, CRNKL1, DDX23, DDX41, DDX48, DDX5, DGCR14, DHX35, DHX38, DHX8, EFTUD2, FRG1, GPATC1, HNRPA1, HNRPA2B1, HNRPA3, HNRPC, HNRPF, HNRPH1, HNRPK, HNRPM, HNRPR, HNRPU, KIAA1160, KIAA1604, LSM2, LSM3, MAGOH, MORG1, PABPC1, PLRG1, PNN, PPIE, PPIL1, PPIL3, PPWD1, PRPF19, PRPF4B, PRPF6, PRPF8, RALY, RBM22, RBM8A, RBMX, SART1, SF3A1, SF3A2, SF3A3, SF3B1, SF3B2, SF3B3, SFRS1, SKIV2L2, SNRPA1, SNRPB, SNRPB2, SNRPD1, SNRPD2, SNRPD3, SNRPE, SNRPF, SNRPG, SNW1, SRRM1, SRRM2, SYF2, SYNCRIP, TFIP11, THOC4, U2AF1, WDR57, XAB2 and ZCCHC8.

Subcellular location

Nucleus. Ref.7

Domain

Composed of two similar domains.

Sequence similarities

Belongs to the helicase family. SKI2 subfamily.

Contains 2 helicase ATP-binding domains.

Contains 2 helicase C-terminal domains.

Ontologies

Alternative products

This entry describes 2 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: O75643-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: O75643-2)

The sequence of this isoform differs from the canonical sequence as follows:
     561-2071: Missing.
Notes: No experimental confirmation available.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 21362136U5 small nuclear ribonucleoprotein 200 kDa helicase
PRO_0000102087

Regions

Domain490 – 673184Helicase ATP-binding 1
Domain684 – 921238Helicase C-terminal 1
Domain1337 – 1512176Helicase ATP-binding 2
Domain1545 – 1753209Helicase C-terminal 2
Nucleotide binding503 – 5108ATP Potential
Nucleotide binding1350 – 13578ATP Potential
Motif615 – 6184DEIH box
Motif1454 – 14574DEVH box

Amino acid modifications

Modified residue261Phosphoserine Ref.15
Modified residue2251Phosphoserine Ref.15 Ref.10 Ref.11 Ref.13 Ref.14 Ref.16
Modified residue7561Phosphoserine Ref.10
Modified residue9221Phosphotyrosine Ref.12
Modified residue9241Phosphotyrosine Ref.12
Modified residue9261Phosphotyrosine Ref.12
Modified residue10561Phosphoserine Ref.11
Modified residue21311Phosphothreonine Ref.15
Modified residue21331Phosphoserine Ref.15
Modified residue21351Phosphoserine Ref.15
Cross-link944Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)
Cross-link971Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)
Cross-link1071Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)
Cross-link1199Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)
Cross-link2091Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)

Natural variations

Alternative sequence561 – 20711511Missing in isoform 2.
VSP_026622
Natural variant17361F → L in a colorectal cancer sample; somatic mutation. Ref.17
VAR_035943

Experimental info

Sequence conflict5881C → F in AAH65924. Ref.6
Sequence conflict6131I → V in CAA94089. Ref.5
Sequence conflict8021A → G in CAA94089. Ref.5
Sequence conflict8401R → H in BAB14906. Ref.2
Sequence conflict10871S → L in AAS78571. Ref.1
Sequence conflict13221Q → R in BAB14906. Ref.2
Sequence conflict13711S → N in CAA94089. Ref.5
Sequence conflict1383 – 13864EALA → RLWQ in CAA94089. Ref.5
Sequence conflict14761Y → N in BAB14906. Ref.2
Sequence conflict15471Y → F in CAA94089. Ref.5
Sequence conflict16671Q → L in CAA94089. Ref.5
Sequence conflict19561K → E in CAA94089. Ref.5
Sequence conflict1961 – 19622KQ → RR in CAA94089. Ref.5
Sequence conflict1965 – 19717HFTSEHI → PFPSGLF in CAA94089. Ref.5
Sequence conflict20311S → R in BAB14906. Ref.2
Sequence conflict20651W → L in AAH65924. Ref.6
Sequence conflict2101 – 21044AHNY → GRHN in CAA94089. Ref.5

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified December 7, 2004. Version 2.
Checksum: 3F3811BDCCC9DDB7

FASTA2,136244,508
        10         20         30         40         50         60 
MADVTARSLQ YEYKANSNLV LQADRSLIDR TRRDEPTGEV LSLVGKLEGT RMGDKAQRTK 

        70         80         90        100        110        120 
PQMQEERRAK RRKRDEDRHD INKMKGYTLL SEGIDEMVGI IYKPKTKETR ETYEVLLSFI 

       130        140        150        160        170        180 
QAALGDQPRD ILCGAADEVL AVLKNEKLRD KERRKEIDLL LGQTDDTRYH VLVNLGKKIT 

       190        200        210        220        230        240 
DYGGDKEIQN MDDNIDETYG VNVQFESDEE EGDEDVYGEV REEASDDDME GDEAVVRCTL 

       250        260        270        280        290        300 
SANLVASGEL MSSKKKDLHP RDIDAFWLQR QLSRFYDDAI VSQKKADEVL EILKTASDDR 

       310        320        330        340        350        360 
ECENQLVLLL GFNTFDFIKV LRQHRMMILY CTLLASAQSE AEKERIMGKM EADPELSKFL 

       370        380        390        400        410        420 
YQLHETEKED LIREERSRRE RVRQSRMDTD LETMDLDQGG EALAPRQVLD LEDLVFTQGS 

       430        440        450        460        470        480 
HFMANKRCQL PDGSFRRQRK GYEEVHVPAL KPKPFGSEEQ LLPVEKLPKY AQAGFEGFKT 

       490        500        510        520        530        540 
LNRIQSKLYR AALETDENLL LCAPTGAGKT NVALMCMLRE IGKHINMDGT INVDDFKIIY 

       550        560        570        580        590        600 
IAPMRSLVQE MVGSFGKRLA TYGITVAELT GDHQLCKEEI SATQIIVCTP EKWDIITRKG 

       610        620        630        640        650        660 
GERTYTQLVR LIILDEIHLL HDDRGPVLEA LVARAIRNIE MTQEDVRLIG LSATLPNYED 

       670        680        690        700        710        720 
VATFLRVDPA KGLFYFDNSF RPVPLEQTYV GITEKKAIKR FQIMNEIVYE KIMEHAGKNQ 

       730        740        750        760        770        780 
VLVFVHSRKE TGKTARAIRD MCLEKDTLGL FLREGSASTE VLRTEAEQCK NLELKDLLPY 

       790        800        810        820        830        840 
GFAIHHAGMT RVDRTLVEDL FADKHIQVLV STATLAWGVN LPAHTVIIKG TQVYSPEKGR 

       850        860        870        880        890        900 
WTELGALDIL QMLGRAGRPQ YDTKGEGILI TSHGELQYYL SLLNQQLPIE SQMVSKLPDM 

       910        920        930        940        950        960 
LNAEIVLGNV QNAKDAVNWL GYAYLYIRML RSPTLYGISH DDLKGDPLLD QRRLDLVHTA 

       970        980        990       1000       1010       1020 
ALMLDKNNLV KYDKKTGNFQ VTELGRIASH YYITNDTVQT YNQLLKPTLS EIELFRVFSL 

      1030       1040       1050       1060       1070       1080 
SSEFKNITVR EEEKLELQKL LERVPIPVKE SIEEPSAKIN VLLQAFISQL KLEGFALMAD 

      1090       1100       1110       1120       1130       1140 
MVYVTQSAGR LMRAIFEIVL NRGWAQLTDK TLNLCKMIDK RMWQSMCPLR QFRKLPEEVV 

      1150       1160       1170       1180       1190       1200 
KKIEKKNFPF ERLYDLNHNE IGELIRMPKM GKTIHKYVHL FPKLELSVHL QPITRSTLKV 

      1210       1220       1230       1240       1250       1260 
ELTITPDFQW DEKVHGSSEA FWILVEDVDS EVILHHEYFL LKAKYAQDEH LITFFVPVFE 

      1270       1280       1290       1300       1310       1320 
PLPPQYFIRV VSDRWLSCET QLPVSFRHLI LPEKYPPPTE LLDLQPLPVS ALRNSAFESL 

      1330       1340       1350       1360       1370       1380 
YQDKFPFFNP IQTQVFNTVY NSDDNVFVGA PTGSGKTICA EFAILRMLLQ SSEGRCVYIT 

      1390       1400       1410       1420       1430       1440 
PMEALAEQVY MDWYEKFQDR LNKKVVLLTG ETSTDLKLLG KGNIIISTPE KWDILSRRWK 

      1450       1460       1470       1480       1490       1500 
QRKNVQNINL FVVDEVHLIG GENGPVLEVI CSRMRYISSQ IERPIRIVAL SSSLSNAKDV 

      1510       1520       1530       1540       1550       1560 
AHWLGCSATS TFNFHPNVRP VPLELHIQGF NISHTQTRLL SMAKPVYHAI TKHSPKKPVI 

      1570       1580       1590       1600       1610       1620 
VFVPSRKQTR LTAIDILTTC AADIQRQRFL HCTEKDLIPY LEKLSDSTLK ETLLNGVGYL 

      1630       1640       1650       1660       1670       1680 
HEGLSPMERR LVEQLFSSGA IQVVVASRSL CWGMNVAAHL VIIMDTQYYN GKIHAYVDYP 

      1690       1700       1710       1720       1730       1740 
IYDVLQMVGH ANRPLQDDEG RCVIMCQGSK KDFFKKFLYE PLPVESHLDH CMHDHFNAEI 

      1750       1760       1770       1780       1790       1800 
VTKTIENKQD AVDYLTWTFL YRRMTQNPNY YNLQGISHRH LSDHLSELVE QTLSDLEQSK 

      1810       1820       1830       1840       1850       1860 
CISIEDEMDV APLNLGMIAA YYYINYTTIE LFSMSLNAKT KVRGLIEIIS NAAEYENIPI 

      1870       1880       1890       1900       1910       1920 
RHHEDNLLRQ LAQKVPHKLN NPKFNDPHVK TNLLLQAHLS RMQLSAELQS DTEEILSKAI 

      1930       1940       1950       1960       1970       1980 
RLIQACVDVL SSNGWLSPAL AAMELAQMVT QAMWSKDSYL KQLPHFTSEH IKRCTDKGVE 

      1990       2000       2010       2020       2030       2040 
SVFDIMEMED EERNALLQLT DSQIADVARF CNRYPNIELS YEVVDKDSIR SGGPVVVLVQ 

      2050       2060       2070       2080       2090       2100 
LEREEEVTGP VIAPLFPQKR EEGWWVVIGD AKSNSLISIK RLTLQQKAKV KLDFVAPATG 

      2110       2120       2130 
AHNYTLYFMS DAYMGCDQEY KFSVDVKEAE TDSDSD 

« Hide

Isoform 2.

Checksum: EDC83DE90411A495
Show »

62571,472

References

« Hide 'large scale' references
[1]"The network of protein-protein interactions within the human U4/U6.U5 tri-snRNP."
Liu S., Rauhut R., Vornlocher H.-P., Luehrmann R.
RNA 12:1418-1430(2006) [PubMed: 16723661] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
[2]"Complete sequencing and characterization of 21,243 full-length human cDNAs."
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. expand/collapse author list , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 264-2136 (ISOFORM 1).
Tissue: Cerebellum and Placenta.
[3]"Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro."
Nagase T., Ishikawa K., Suyama M., Kikuno R., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O.
DNA Res. 5:277-286(1998) [PubMed: 9872452] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 111-2136 (ISOFORM 1).
Tissue: Brain.
[4]"Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones."
Nakajima D., Okazaki N., Yamakawa H., Kikuno R., Ohara O., Nagase T.
DNA Res. 9:99-106(2002) [PubMed: 12168954] [Abstract]
Cited for: SEQUENCE REVISION.
[5]"The HeLa 200 kDa U5 snRNP-specific protein and its homologue in Saccharomyces cerevisiae are members of the DEXH-box protein family of putative RNA helicases."
Lauber J., Fabrizio P., Teigelkamp S., Lane W.S., Hartmann E., Luehrmann R.
EMBO J. 15:4001-4015(1996) [PubMed: 8670905] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 436-2136, PROTEIN SEQUENCE OF 672-690; 1200-1213; 1295-1317; 1326-1338 AND 1717-1728.
Tissue: Fetal brain.
[6]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 316-2136.
Tissue: Placenta and Skin.
[7]"The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro."
Laggerbauer B., Achsel T., Luehrmann R.
Proc. Natl. Acad. Sci. U.S.A. 95:4188-4192(1998) [PubMed: 9539711] [Abstract]
Cited for: FUNCTION, SUBCELLULAR LOCATION.
[8]"Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis."
Jurica M.S., Licklider L.J., Gygi S.P., Grigorieff N., Moore M.J.
RNA 8:426-439(2002) [PubMed: 11991638] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY, IDENTIFICATION IN THE SPICEOSOMAL C COMPLEX.
[9]"A proteomic study of SUMO-2 target proteins."
Vertegaal A.C.O., Ogg S.C., Jaffray E., Rodriguez M.S., Hay R.T., Andersen J.S., Mann M., Lamond A.I.
J. Biol. Chem. 279:33791-33798(2004) [PubMed: 15175327] [Abstract]
Cited for: SUMOYLATION [LARGE SCALE ANALYSIS] AT LYS-944; LYS-971; LYS-1071; LYS-1199 AND LYS-2091, MASS SPECTROMETRY.
[10]"Large-scale characterization of HeLa cell nuclear phosphoproteins."
Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J., Cohn M.A., Cantley L.C., Gygi S.P.
Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004) [PubMed: 15302935] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-225 AND SER-756, MASS SPECTROMETRY.
Tissue: Epithelium.
[11]"Global, in vivo, and site-specific phosphorylation dynamics in signaling networks."
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M.
Cell 127:635-648(2006) [PubMed: 17081983] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-225 AND SER-1056, MASS SPECTROMETRY.
Tissue: Epithelium.
[12]"Tyrosine phosphorylated Par3 regulates epithelial tight junction assembly promoted by EGFR signaling."
Wang Y., Du D., Fang L., Yang G., Zhang C., Zeng R., Ullrich A., Lottspeich F., Chen Z.
EMBO J. 25:5058-5070(2006) [PubMed: 17053785] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-922; TYR-924 AND TYR-926, MASS SPECTROMETRY.
[13]"Phosphoproteome analysis of the human mitotic spindle."
Nousiainen M., Sillje H.H.W., Sauer G., Nigg E.A., Koerner R.
Proc. Natl. Acad. Sci. U.S.A. 103:5391-5396(2006) [