Reviewed, UniProtKB/Swiss-Prot O81908 (PPR2_ARATH)

Names and origin

Protein names

Recommended name:
    Pentatricopeptide repeat-containing protein At1g02060, chloroplastic

Gene names

Ordered Locus Names:	At1g02060
ORF Names:	T7I23.14

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	710 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Subcellular location	Plastid › chloroplastPotential.
Sequence similarities	Belongs to the PPR family. P subfamily. Contains 12 PPR (pentatricopeptide) repeats.
Sequence caution	The sequence AAC24378.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
Cellular component	Chloroplast Plastid
Domain	Repeat Transit peptide
Technical term	Complete proteome
Gene Ontology (GO)
Cellular component	chloroplast Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Transit peptide	1 – 21	21	Chloroplast Potential
	Chain	22 – 710	689	Pentatricopeptide repeat-containing protein At1g02060, chloroplastic		PRO_0000342743
Regions
	Repeat	137 – 171	35	PPR 1
	Repeat	172 – 202	31	PPR 2
	Repeat	208 – 242	35	PPR 3
	Repeat	243 – 277	35	PPR 4
	Repeat	280 – 314	35	PPR 5
	Repeat	315 – 351	37	PPR 6
	Repeat	352 – 386	35	PPR 7
	Repeat	387 – 421	35	PPR 8
	Repeat	429 – 459	31	PPR 9
	Repeat	463 – 497	35	PPR 10
	Repeat	498 – 532	35	PPR 11
	Repeat	533 – 567	35	PPR 12

Sequences

	Sequence		Length	Mass (Da)
	O81908-1 [UniParc]. Last modified July 1, 2008. Version 2. Checksum: 6B545411C7EA88FB	FASTA	710	80,832
	10 20 30 40 50 60 MVSSVPKLHA LFVSKSQPVL RAAKVTNEER STKSKLARSL ARAVNSNPWS DELESSLSSL 70 80 90 100 110 120 HPSQTISRTT VLQTLRLIKV PADGLRFFDW VSNKGFSHKE QSFFLMLEFL GRARNLNVAR 130 140 150 160 170 180 NFLFSIERRS NGCVKLQDRY FNSLIRSYGN AGLFQESVKL FQTMKQMGIS PSVLTFNSLL 190 200 210 220 230 240 SILLKRGRTG MAHDLFDEMR RTYGVTPDSY TFNTLINGFC KNSMVDEAFR IFKDMELYHC 250 260 270 280 290 300 NPDVVTYNTI IDGLCRAGKV KIAHNVLSGM LKKATDVHPN VVSYTTLVRG YCMKQEIDEA 310 320 330 340 350 360 VLVFHDMLSR GLKPNAVTYN TLIKGLSEAH RYDEIKDILI GGNDAFTTFA PDACTFNILI 370 380 390 400 410 420 KAHCDAGHLD AAMKVFQEML NMKLHPDSAS YSVLIRTLCM RNEFDRAETL FNELFEKEVL 430 440 450 460 470 480 LGKDECKPLA AAYNPMFEYL CANGKTKQAE KVFRQLMKRG VQDPPSYKTL ITGHCREGKF 490 500 510 520 530 540 KPAYELLVLM LRREFVPDLE TYELLIDGLL KIGEALLAHD TLQRMLRSSY LPVATTFHSV 550 560 570 580 590 600 LAELAKRKFA NESFCLVTLM LEKRIRQNID LSTQVVRLLF SSAQKEKAFL IVRLLYDNGY 610 620 630 640 650 660 LVKMEELLGY LCENRKLLDA HTLVLFCLEK SQMVDIDTCN TVIEGLCKHK RHSEAFSLYN 670 680 690 700 710 ELVELGNHQQ LSCHVVLRNA LEAAGKWEEL QFVSKRMATL RESDDCSVLE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed: 11130712] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	"Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis." Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I. Plant Cell 16:2089-2103(2004) [PubMed: 15269332] [Abstract] Cited for: GENE FAMILY.

Web resources

Arabidopsis PPR Protein Database

Cross-references

Sequence databases
EMBLGenBankDDBJ	U89959 Genomic DNA. Translation: AAC24378.1. Sequence problems.
PIR	F86152.
RefSeq	NP_171708.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	839279.
GenomeReviews	Gene locus AT1G02060 in contig CT485782_GR.
KEGG	ath:AT1G02060.
Organism-specific databases
GeneFarm	4822. 436.
TAIR	At1g02060.
Family and domain databases
TIGRFAMs	TIGR00756. PPR. 11 hits.
PROSITE	PS51375. PPR. 13 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

PPR2_ARATH

Accession

Primary (citable) accession number: O81908

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 1, 2008
Last sequence update:	July 1, 2008
Last modified:	November 4, 2008
This is version 37 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)