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Reviewed, UniProtKB/Swiss-Prot O81916 (YC22_ARATH)

Last modified December 16, 2008. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Uncharacterized calcium-binding protein At1g02270
Gene names
Ordered Locus Names: At1g02270
ORF Names: T7I23.22, T6A9_9
OrganismArabidopsis thaliana (Mouse-ear cress) [Complete proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

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Protein attributes

Sequence length484 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at transcript level.

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General annotation (Comments)

Subcellular location

Membrane; Single-pass membrane proteinPotential.

Sequence similarities

Contains 1 EF-hand domain.

Sequence caution

The sequence AAC24386.1 differs from that shown. Reason: Erroneous gene model prediction.

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Ontologies

Keywords

   Cellular componentMembrane
   DomainTransmembrane
   LigandCalcium
   Technical termComplete proteome

Gene Ontology (GO)

   Biological processresponse to cold

Inferred from expression pattern. Source: TAIR

   Cellular componentintegral to membrane

Inferred from electronic annotation. Source: UniProtKB-KW

nucleus

Inferred from direct assay. Source: TAIR

   Molecular functioncalcium ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 484484Uncharacterized calcium-binding protein At1g02270
PRO_0000073884

Regions

Transmembrane25 – 4521 Potential
Domain384 – 41936EF-hand
Calcium binding397 – 40812 Potential

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Sequences

Sequence LengthMass (Da)Tools
O81916-1 [UniParc].

Last modified May 29, 2007. Version 2.
Checksum: 9E99EB00A4129FF8

FASTA48455,474
        10         20         30         40         50         60 
MQSHQNRSRL SLILRSRFIP SFSSPLSLFV VLAAVPLPIY FSGLLSGRNN KPLSVMRLNS 

        70         80         90        100        110        120 
NLASSMVESN ISCTTFNILA PIYKRVDQKN HSTRESDFRT LWLARNQRIL DLLLHQRSSV 

       130        140        150        160        170        180 
ICLQEVWVGN EELVNMYHHQ LSSSGYTIYQ LARTNSRGDG LLTAIHKDHF KVVNYRELLF 

       190        200        210        220        230        240 
NDFGDRVAQL LHVKTVIPFP LNGKQDVQQE VIIVNTHLLF PHDSSLSIVR LHQVYKILEY 

       250        260        270        280        290        300 
LEAYQKENKL NHMPIILCGD WNGSKRGHVY KFLRSQGFIS SYDDAHQYTD SDAHRWVSHR 

       310        320        330        340        350        360 
NHRGNICGVD FIWLCNPSDS RKPLRTSWVE AVFSIIKYQL HKASIAEDDA FTFLGAKNHS 

       370        380        390        400        410        420 
DSLTYSDFCL ALQKVNLTGI PHGLSFEETK ELWVRADLDG NGVFDYEELK KIWNMTMVNQ 

       430        440        450        460        470        480 
PGNCKESVME SKKEEGEDEA IGLKVNKAIL FPQEAEKGLW PENYNISDHA CLTVQFSPVK 


MLCS

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References

[1]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed: 11130712] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed: 14593172] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.

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Cross-references

Sequence databases

U89959 Genomic DNA. Translation: AAC24386.1. Sequence problems.
AY052704 mRNA. Translation: AAK96608.1.
AY063716 mRNA. Translation: AAL36066.1.
RefSeqNP_563646.1.
UniGeneAt.10716

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID839381.
GenomeReviewsGene locus AT1G02270 in contig CT485782_GR.
KEGGath:AT1G02270.
NMPDRfig|3702.1.peg.345.

Organism-specific databases

TAIRAt1g02270.

Gene expression databases

ArrayExpressO81916.

Family and domain databases

InterProIPR011992. EF-Hand_type.
IPR002048. EF_hand_Ca_bd.
IPR005135. Endo/exonuclease/phosphatase.
[Graphical view]
Gene3DG3DSA:1.10.238.10. EF-Hand_type. 1 hit.
PfamPF00036. efhand. 1 hit.
PF03372. Exo_endo_phos. 1 hit.
[Graphical view]
PROSITEPS00018. EF_HAND_1. False negative.
PS50222. EF_HAND_2. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameYC22_ARATH
AccessionPrimary (citable) accession number: O81916
Secondary accession number(s): Q940T7
Entry history
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: May 29, 2007
Last modified: December 16, 2008
This is version 49 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectPPAP (Plant Proteome Annotation Project)

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Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents