Reviewed, UniProtKB/Swiss-Prot P56080 (Y117_HELPY)

Names and origin

Protein names

Recommended name:
    UPF0026 protein HP_0117

Gene names

Ordered Locus Names:

HP_0117

Organism

Helicobacter pylori (Campylobacter pylori) [Complete proteome] [HAMAP]

Taxonomic identifier

210 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Epsilonproteobacteria › Campylobacterales › Helicobacteraceae › Helicobacter

Protein attributes

Sequence length	308 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Cofactor	Binds 1 4Fe-4S cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine Potential.
Sequence similarities	Belongs to the UPF0026 family.

Ontologies

Keywords
Ligand	4Fe-4S Iron Iron-sulfur Metal-binding S-adenosyl-L-methionine
Technical term	Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view
Molecule processing
	Chain	1 – 308	308	UPF0026 protein HP_0117
Sites
	Metal binding	33	1	Iron-sulfur (4Fe-4S-S-AdoMet) Potential
	Metal binding	37	1	Iron-sulfur (4Fe-4S-S-AdoMet) Potential
	Metal binding	40	1	Iron-sulfur (4Fe-4S-S-AdoMet) Potential

Sequences

	Sequence		Length	Mass (Da)
	P56080-1 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: BBAA863283FBDF4B	FASTA	308	34,405
	10 20 30 40 50 60 MAKENPPIVF GPVLSRRFGK SLGVDLSPSK KQCNYNCIYC ELGKAKPIER MEEVIKVETL 70 80 90 100 110 120 INAIQNALNN LTTPIDVLTI TANGEPTLYP HLLELIQSIK PFLKGVKTLI LSNGSLFYEP 130 140 150 160 170 180 KVQQALKEFD IVKFSLDAID LKAFERVDKP YSKDINKILE GILRFSQIYQ GQLVAEVLLI 190 200 210 220 230 240 KGVNDSANNL KLIAAFLKQI NIARVDLSTI DRPSSFKAPK LSEDELLKCS LFFEGLCVSL 250 260 270 280 290 300 PKRSITQAKK LISCGIDELL ALISRRPLSA EEAPLILDSN AFKHLETLLN HKQITIKKVG SLEFYCAF

References

[1]

"The complete genome sequence of the gastric pathogen Helicobacter pylori." Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J. , Khalak H.G., Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., Smith H.O., Fraser C.M., Venter J.C. Nature 388:539-547(1997) [PubMed: 9252185] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700392 / 26695.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AE000511 Genomic DNA. Translation: AAD07185.1.
PIR	E64534.
RefSeq	NP_206917.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
DIP	DIP:3297N.
Genome annotation databases
GeneID	900364.
GenomeReviews	Gene locus HP_0117 in contig AE000511_GR.
KEGG	hpy:HP0117.
NMPDR	fig|85962.1.peg.115.
TIGR	HP_0117.
Phylogenomic databases
HOGENOM	P56080.
Family and domain databases
InterPro	IPR007197. Radical_SAM. [Graphical view]
Pfam	PF04055. Radical_SAM. 1 hit. [Graphical view]
ProDom	P56080. [Graphical view] [Entries sharing at least one domain]
BLOCKS	Search...
Other Resources
LinkHub	P56080.
ProtoNet	Search...

Entry information

Entry name

Y117_HELPY

Accession

Primary (citable) accession number: P56080

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	July 22, 2008
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)