Reviewed, UniProtKB/Swiss-Prot Q0JPA4 (CCA12_ORYSJ)

Names and origin

Protein names

Recommended name:
    Cyclin-A1-2
Alternative name(s):
    G2/mitotic-specific cyclin-A1-2
      Short name(s)=CycA1;2

Gene names

Name:	CYCA1-2
Ordered Locus Names:	Os01g0233100/Os01g0233300, LOC_Os01g13229
ORF Names:	P0702F03.7

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	477 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Sequence similarities

Belongs to the cyclin family. Cyclin AB subfamily.

Sequence caution

BAD81374.1 sequence differs from that shown. Reason: Erroneous gene model prediction. BAF04423.1 sequence differs from that shown. Reason: Erroneous gene model prediction. Was originally thought to correspond to two different genes Os01g0233100 and Os01g0233300. BAF04424.1 sequence differs from that shown. Reason: Erroneous gene model prediction. Was originally thought to correspond to two different genes Os01g0233100 and Os01g0233300.

Ontologies

Keywords
Biological process	Cell cycle Cell division
Molecular function	Cyclin
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view
Molecule processing
	Chain	1 – 477	477	Cyclin-A1-2

Sequences

	Sequence		Length	Mass (Da)
	Q0JPA4-1 [UniParc]. Last modified May 15, 2007. Version 2. Checksum: CB09E0C78D73A64B	FASTA	477	52,618
	10 20 30 40 50 60 MAAKRPAAGE GGGKAAAGAA AAKKRVALVN ITNVAAAANN AKFNSATWAA PVKKGSLASG 70 80 90 100 110 120 RNVCTNRVSA VKSASAKPAP AISRHESAPQ KESVIPPKVL SIVPTAAPAP VTVPCSSFVS 130 140 150 160 170 180 PMHSGDSVSV DETMSMCDSM KSPDFEYIDN GDSSSVLGSL QRRANENLRI SEDRDVEETK 190 200 210 220 230 240 WNKDAPSPME IDQICDVDNN YEDPQLCATL ASDIYMHLRE AETRKRPSTD FMETIQKDVN 250 260 270 280 290 300 PSMRAILIDW LVEVAEEYRL VPDTLYLTVN YIDRYLSGNE INRQRLQLLG VACMLIAAKY 310 320 330 340 350 360 EEICAPQVEE FCYITDNTYF RDEVLEMEAS VLNYLKFEVT APTAKCFLRR FVRVAQVSDE 370 380 390 400 410 420 DPALHLEFLA NYVAELSLLE YNLLSYPPSL VAASAIFLAK FILQPTKHPW NSTLAHYTQY 430 440 450 460 470 KSSELSDCVK ALHRLFSVGP GSNLPAIREK YTQHKKFVAK KHCPPSVPSE FFRDATC

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome sequence and structure of rice chromosome 1." Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T. Nature 420:312-316(2002) [PubMed: 12447438] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed: 16100779] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana." The rice annotation project (RAP) Genome Res. 17:175-183(2007) [PubMed: 17210932] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[4]	"Genome-wide analysis of cyclin family in rice (Oryza sativa L.)." La H., Li J., Ji Z., Cheng Y., Li X., Jiang S., Venkatesh P.N., Ramachandran S. Mol. Genet. Genomics 275:374-386(2006) [PubMed: 16435118] [Abstract] Cited for: GENE FAMILY, NOMENCLATURE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AP002481 Genomic DNA. Translation: BAD81374.1. Sequence problems. AP008207 Genomic DNA. Translation: BAF04423.1. Sequence problems. AP008207 Genomic DNA. Translation: BAF04424.1. Sequence problems.
RefSeq	NP_001042509.1. NP_001042510.1.
UniGene	Os.14085
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	4324285. 4324286.
KEGG	osa:4324285. osa:4324286.
Organism-specific databases
Gramene	Q5NAY2.
Family and domain databases
InterPro	IPR006670. Cyclin. IPR014400. Cyclin_A_B_D_E. IPR004367. Cyclin_C. IPR006671. Cyclin_N. IPR013763. Cyclin_related. [Graphical view]
Gene3D	G3DSA:1.10.472.10. Cyclin_related. 1 hit.
Pfam	PF02984. Cyclin_C. 1 hit. PF00134. Cyclin_N. 1 hit. [Graphical view]
PIRSF	PIRSF001771. Cyclin_A_B_D_E. 1 hit.
SMART	SM00385. CYCLIN. 2 hits. [Graphical view]
PROSITE	PS00292. CYCLINS. 1 hit. [Graphical view]
ProDom	Q0JPA4. [Graphical view] [Entries sharing at least one domain]
BLOCKS	Search...
Other Resources
ProtoNet	Search...

Entry information

Entry name

CCA12_ORYSJ

Accession

Primary (citable) accession number: Q0JPA4
Secondary accession number(s): Q0JPA5, Q5NAY2

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 15, 2007
Last sequence update:	May 15, 2007
Last modified:	July 22, 2008
This is version 13 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)