Reviewed, UniProtKB/Swiss-Prot Q3TBN1 (CG042_MOUSE)

Names and origin

Protein names	Recommended name:     UPF0458 protein C7orf42 homolog
Organism	Mus musculus (Mouse)
Taxonomic identifier	10090 [NCBI]
Taxonomic lineage	Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus

Protein attributes

Sequence length	314 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Subcellular location	Membrane; Multi-pass membrane proteinPotential.
Sequence similarities	Belongs to the UPF0458 family.
Sequence caution	The sequence BAB21996.1 differs from that shown. Reason: Frameshift at position 312.

Ontologies

Keywords
Cellular component	Membrane
Domain	Transmembrane
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view
Molecule processing
	Chain	1 – 314	314	UPF0458 protein C7orf42 homolog
Regions
	Transmembrane	21 – 41	21	Potential
	Transmembrane	179 – 199	21	Potential
	Transmembrane	236 – 258	23	Potential
	Transmembrane	270 – 290	21	Potential
Experimental info
	Sequence conflict	63	1	N → D in AAH33455. Ref.2

Sequences

	Sequence		Length	Mass (Da)
	Q3TBN1-1 [UniParc]. Last modified October 11, 2005. Version 1. Checksum: FC21A7434BA1C2EF	FASTA	314	35,041
	10 20 30 40 50 60 MFSINPLENL KLYISSRPPL VVFMISVSAM AIAFLTLGYF FKIKEIKSPE MAEDWNTFLL 70 80 90 100 110 120 RFNDLDLCVS ENETLKHLSN DTTTPESTMT VGQARSSTQP PQSLEESGPI NISVAITLTL 130 140 150 160 170 180 DPLKPFGGYS RNVTHLYSTI LGHQIGLSGR EAHEEINITF TLPAAWNADD CALHGHCEQA 190 200 210 220 230 240 VFTACMTLTA APGVFPVTVQ PPHCIPDTYS NATLWYKIFT TARDANTKYA QDYNPFWCYK 250 260 270 280 290 300 GAIGKVYHAL NPKLTVVVPD DDRSLINLHL MHTSYFLFVM VITMFCYAVI KGRPSKLRQS 310 NPEFCPEKVA LADA

References

[1]

"The transcriptional landscape of the mammalian genome." Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y. Science 309:1559-1563(2005) [PubMed: 16141072] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: C57BL/6J and NOD. Tissue: Dendritic cell, Heart and Kidney.

[2]

"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: Czech II. Tissue: Mammary tumor.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AK002297 mRNA. Translation: BAB21996.1. Frameshift. AK142176 mRNA. Translation: BAE24962.1. AK171152 mRNA. Translation: BAE42278.1. BC033455 mRNA. Translation: AAH33455.1.
RefSeq	NP_001074863.1.
UniGene	Mm.258508
3D structure databases
ModBase	Search...
Genome annotation databases
Ensembl	ENSMUSG00000053094. Mus musculus. [Contig view]
GeneID	71667.
KEGG	mmu:71667.
Organism-specific databases
MGI	MGI:1918917. 0610007L01Rik.
Phylogenomic databases
HOVERGEN	Q3TBN1.
Gene expression databases
ArrayExpress	Q3TBN1.
CleanEx	MM_0610007L01RIK.
Family and domain databases
ProDom	Q3TBN1. [Graphical view] [Entries sharing at least one domain]
BLOCKS	Search...
Other Resources
ProtoNet	Search...

Entry information

Entry name

CG042_MOUSE

Accession

Primary (citable) accession number: Q3TBN1
Secondary accession number(s): Q8CIB2, Q9DD07

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 10, 2007
Last sequence update:	October 11, 2005
Last modified:	July 22, 2008
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HPI (Human Proteome Initiative)