Reviewed, UniProtKB/Swiss-Prot Q5NB85 (ARFA_ORYSJ)

Names and origin

Protein names

Recommended name:
    Auxin response factor 1
Alternative name(s):
    OsARF16

Gene names

Name:	ARF1
Synonyms:	ARF16
Ordered Locus Names:	Os01g0236300, LOC_Os01g13520
ORF Names:	P0708G02.26

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	699 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Function	Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Subunit structure	Homo and heterodimers By similarity.
Subcellular location	NucleusBy similarity.
Tissue specificity	Expressed in roots, culms, leaves and young panicles.
Induction	By auxin under light or dark conditions.
Domain	Interactions between auxin response factors (ARFs) and Aux/IAA proteins occur through their C-terminal dimerization domains III and IV.
Sequence similarities	Belongs to the ARF family. Contains 1 Aux/IAA-ARF domain. Contains 1 TF-B3 DNA-binding domain.

Ontologies

Keywords
Biological process	Auxin signaling pathway Transcription Transcription regulation
Cellular component	Nucleus
Ligand	DNA-binding
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view
Molecule processing
	Chain	1 – 699	699	Auxin response factor 1
Regions
	Domain	596 – 674	79	Aux/IAA-ARF
	DNA binding	122 – 224	103	TF-B3

Sequences

	Sequence		Length	Mass (Da)
	Q5NB85-1 [UniParc]. Last modified February 1, 2005. Version 1. Checksum: E15605439208D679	FASTA	699	77,502
	10 20 30 40 50 60 MSSQGAGGGV GDPELFAELW RACAGPLVEV PQRDERVFYF LQGHLEQLQE PTDPALLAEQ 70 80 90 100 110 120 IKMFQVPYKI LCKVVNVELK AETETDEVFA QITLQPDPDQ ENLPTLPDPP LPEQPRPVVH 130 140 150 160 170 180 SFCKILTPSD TSTHGGFSVL RRHANECLPP LDMSMATPTQ ELITKDLHGS EWRFKHIYRG 190 200 210 220 230 240 QPRRHLLTTG WSTFVTSKKL ISGDAFVYLR SETGEQRVGV RRLVQKQSTM PASVISSQSM 250 260 270 280 290 300 HLGVLASASH AIKTNSIFLV YYRPRLSQSQ YIVSVNKYLA ASKVGFNVGM RFKMSFEGED 310 320 330 340 350 360 VPVKKFSGTI VGEGDLSLQW SGSEWKSLKV QWDEVTNVNG PERVSPWEIE TCDGTAPAIN 370 380 390 400 410 420 VPLQSATKNK RPREPSETID LQSLEPAQEF WLSGMPQQHE KTGIGSSEPN CISGHQVVWP 430 440 450 460 470 480 GEHPGYGAVS SSVCQNPLVL ESWLKDFNSS NKGVSPTLSE ISQKIFQVTS NEARIATWPA 490 500 510 520 530 540 RSAYQAEEPT SKLSSNTAAC GYRTEEVAPN ASKVVEGKKE PAMFRLFGVD LMKCTSISTT 550 560 570 580 590 600 TDDKSSVGAG EASAKGTGSH EDSGQLSAFS KVTKEHIAAD ESPQEIQSHQ NYTARTRIKV 610 620 630 640 650 660 QMHGNAVGRA VDLANLDGYE QLMNELEEMF NIKDLKQKWK VAFTDDEGDT MEVGDDPWLE 670 680 690 FCQMVRKIVL YPIEDEKKIE PHPKLLSSAN PEQDQKTGF

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome sequence and structure of rice chromosome 1." Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T. Nature 420:312-316(2002) [PubMed: 12447438] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed: 16100779] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana." The rice annotation project (RAP) Genome Res. 17:175-183(2007) [PubMed: 17210932] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[4]	"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed: 12869764] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Nipponbare.
[5]	"Auxin response factor family in rice." Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M. Genes Genet. Syst. 76:373-380(2001) [PubMed: 11922106] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 5-699. Strain: cv. Nipponbare.
[6]	"Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa)." Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y. Gene 394:13-24(2007) [PubMed: 17408882] [Abstract] Cited for: GENE FAMILY, TISSUE SPECIFICITY, INDUCTION, NOMENCLATURE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AP001539 Genomic DNA. Translation: BAD81271.1. AP008207 Genomic DNA. Translation: BAF04442.1. AK102521 mRNA. No translation available. AB071300 mRNA. Translation: BAB85920.1.
RefSeq	NP_001042528.1.
UniGene	Os.22269
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	4327785.
KEGG	osa:4327785.
Organism-specific databases
Gramene	Q5NB85.
Family and domain databases
InterPro	IPR011525. AuxIAA_ARF_dimer. IPR010525. Auxin_resp. IPR003340. TF_B3. [Graphical view]
Pfam	PF06507. Auxin_resp. 1 hit. PF02362. B3. 1 hit. [Graphical view]
PROSITE	PS50863. B3. 1 hit. PS50962. IAA_ARF. 1 hit. [Graphical view]
ProDom	Q5NB85. [Graphical view] [Entries sharing at least one domain]
BLOCKS	Search...
Other Resources
ProtoNet	Search...

Entry information

Entry name

ARFA_ORYSJ

Accession

Primary (citable) accession number: Q5NB85
Secondary accession number(s): Q8S975

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 11, 2007
Last sequence update:	February 1, 2005
Last modified:	July 22, 2008
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)