Reviewed, UniProtKB/Swiss-Prot Q761Z9 (RH18_ORYSJ)

Names and origin

Protein names

Recommended name:
    DEAD-box ATP-dependent RNA helicase 18
    EC=3.6.1.-
Alternative name(s):
    BRI1-KD-interacting protein 115
      Short name(s)=BIP115

Gene names

Ordered Locus Names:	Os01g0164500, LOC_Os01g07080
ORF Names:	B1189A09.47, P0701D05.2

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	647 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Subunit structure	Interacts with BRI1.
Domain	The Q motif is unique to and characteristic of the DEAD box family of RNA helicases and controls ATP binding and hydrolysis.
Post-translational modification	Phosphorylated Probable.
Sequence similarities	Belongs to the DEAD box helicase family. DDX55/SPB4 subfamily. Contains 1 helicase ATP-binding domain. Contains 1 helicase C-terminal domain.

Ontologies

Keywords
Domain	Coiled coil
Ligand	ATP-binding Nucleotide-binding RNA-binding
Molecular function	Helicase Hydrolase
PTM	Phosphoprotein
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view
Molecule processing
	Chain	1 – 647	647	DEAD-box ATP-dependent RNA helicase 18
Regions
	Domain	54 – 232	179	Helicase ATP-binding
	Domain	274 – 430	157	Helicase C-terminal
	Nucleotide binding	67 – 74	8	ATP By similarity
	Coiled coil	507 – 582	76	Potential
	Motif	23 – 51	29	Q motif
	Motif	180 – 183	4	DEAD box

Sequences

	Sequence		Length	Mass (Da)
	Q761Z9-1 [UniParc]. Last modified April 3, 2007. Version 2. Checksum: F0EC9AFB47436504	FASTA	647	72,217
	10 20 30 40 50 60 MSSSSSSLAA AAARKRALTE QRFSELSPAL SPEVVKALKG GGFRRCTPVQ AAAIPLLLSH 70 80 90 100 110 120 KDVAVDAATG SGKTLAFVVP VVEILRRRPS PPKPHEVLGI IISPTRELSS QIYNVAQPFF 130 140 150 160 170 180 ATLKGVSSML LVGGFDIKAE LKKLEEEGAN ILVGTPGKLF DVMERLDTLN YKNLEILILD 190 200 210 220 230 240 EADRLLDLGF QKQITSIISK LPKLRRTGLF SATQTEAVKE LAKAGLRNPV RVEVKTEVKP 250 260 270 280 290 300 TGKDGAQQEL GPSKTPLGLR LEYMICEASN KSSQLVDFLV QNNGKKIMVY FATCACVDYW 310 320 330 340 350 360 AIVLPLLDSL KGSPIIPYHG KMKQGPREKA LASFSALSSG ILVCTDVAAR GLDIPHVDLI 370 380 390 400 410 420 VQYDPPQDPN VFIHRAGRTA RYDQEGDAIV FLLPKEDTYV EFLKRRGVPL TERECSTNAV 430 440 450 460 470 480 DIVPQIRSAA LEDRNVMEKG LTAFVSFVRA YKEHHCSYIF SWKDLEIGRL GMEYGLLQIP 490 500 510 520 530 540 SMPEVKHHSL SLEGFTPVKD VDVTKIKYKD KAREKQRQKT LKRKAEELAL RPEIEKRRKA 550 560 570 580 590 600 PEKPEKPKRK KTGKQRQAVQ TKEDMDELAN EYRLLKKLKR GVIDEDEYEK LTGFGESDDD 610 620 630 640 DSSDGGDSDL DERKERGNKV LKKIKQKGKA KGSRRFEGRS KQKTRRR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome sequence and structure of rice chromosome 1." Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T. Nature 420:312-316(2002) [PubMed: 12447438] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed: 16100779] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana." The rice annotation project (RAP) Genome Res. 17:175-183(2007) [PubMed: 17210932] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[4]	"The genomes of Oryza sativa: a history of duplications." Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H. PLoS Biol. 3:266-281(2005) [PubMed: 15685292] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[5]	"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed: 12869764] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Nipponbare.
[6]	"Two proton pump interactors identified from a direct phosphorylation screening of a rice cDNA library by using a recombinant BRI1 receptor kinase." Hirabayashi S., Matsushita Y., Sato M., Ohi R., Kasahara M., Abe H., Nyunoya H. Plant Biotechnol. 21:35-45(2004) Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 502-647, PHOSPHORYLATION, INTERACTION WITH BRI1. Strain: cv. Nipponbare. Tissue: Seedling.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AP003209 Genomic DNA. Translation: BAC00580.1. AP003301 Genomic DNA. Translation: BAB64789.1. AP008207 Genomic DNA. Translation: BAF04016.1. CM000138 Genomic DNA. Translation: EAZ10665.1. AK068747 mRNA. No translation available. AB118002 mRNA. Translation: BAD11343.1.
RefSeq	NP_001042102.1.
UniGene	Os.32557
3D structure databases
HSSP	HSSP built from PDB template 1QDE based on UniProtKB P10081.
ModBase	Search...
Genome annotation databases
GeneID	4324413.
KEGG	osa:4324413.
NMPDR	fig|39947.1.peg.1342.
Organism-specific databases
Gramene	Q761Z9.
Family and domain databases
InterPro	IPR014001. DEAD-like_N. IPR001650. DNA/RNA_helicase_C. IPR011545. DNA/RNA_helicase_DEAD/DEAH_N. IPR014021. Helicase_SF1/SF2_ATP-bd. IPR000629. RNA-helicase_DEAD-box_CS. IPR014014. RNA_helicase_DEAD_Q_motif. [Graphical view]
Pfam	PF00270. DEAD. 1 hit. PF00271. Helicase_C. 1 hit. [Graphical view]
SMART	SM00487. DEXDc. 1 hit. SM00490. HELICc. 1 hit. [Graphical view]
PROSITE	PS00039. DEAD_ATP_HELICASE. 1 hit. PS51192. HELICASE_ATP_BIND_1. 1 hit. PS51194. HELICASE_CTER. 1 hit. PS51195. Q_MOTIF. 1 hit. [Graphical view]
ProDom	Q761Z9. [Graphical view] [Entries sharing at least one domain]
BLOCKS	Search...
Other Resources
ProtoNet	Search...

Entry information

Entry name

RH18_ORYSJ

Accession

Primary (citable) accession number: Q761Z9
Secondary accession number(s): Q942Q0

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 3, 2007
Last sequence update:	April 3, 2007
Last modified:	July 22, 2008
This is version 19 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)