Reviewed, UniProtKB/Swiss-Prot Q7W6N4 (SYA_BORPA)

Names and origin

Protein names

Recommended name:
    Alanyl-tRNA synthetase
    EC=6.1.1.7
Alternative name(s):
    Alanine--tRNA ligase
      Short name=AlaRS

Gene names

Name:	alaS
Synonyms:	lovB
Ordered Locus Names:	BPP2870

Organism

Bordetella parapertussis [Complete proteome] [HAMAP]

Taxonomic identifier

519 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Alcaligenaceae › Bordetella

Protein attributes

Sequence length	874 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Catalytic activity	ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala).
Subcellular location	Cytoplasm.
Sequence similarities	Belongs to the class-II aminoacyl-tRNA synthetase family.

Ontologies

Keywords
Biological process	Protein biosynthesis
Cellular component	Cytoplasm
Ligand	ATP-binding Nucleotide-binding
Molecular function	Aminoacyl-tRNA synthetase Ligase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	alanyl-tRNA aminoacylation Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: HAMAP
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP alanine-tRNA ligase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view
Molecule processing
	Chain	1 – 874	874	Alanyl-tRNA synthetase

Sequences

	Sequence		Length	Mass (Da)
	Q7W6N4-1 [UniParc]. Last modified October 1, 2003. Version 1. Checksum: 58AC0B1776B178C8	FASTA	874	94,882
	10 20 30 40 50 60 MKSSEIRQKF LQFFQSKGHT IVPSSSLVPA NDPTLLFTNS GMVQFKDVFT GKEARAYKRA 70 80 90 100 110 120 TSSQRSVRAG GKHNDLENVG YTARHHTFFE MLGNFSFGDY FKREAIQYAW ELLTQVYRLP 130 140 150 160 170 180 AEKLWVTVYQ EDDEAYDIWA KEVGVPAERI IRIGDNKGAR YASDNFWQMA DTGPCGPCSE 190 200 210 220 230 240 IFYDHGPEIW GGPPGSLEED GDRYIEIWNL VFMQFERDAA GNMERLPKPC VDTGMGLERI 250 260 270 280 290 300 AAVLQHVHSN YEIDLFQKLI AAAARETGVK DLADNSLKVI ADHIRACAFL IVDGIIPSNE 310 320 330 340 350 360 GRGYVLRRIV RRALRHGYKL GQTKPFFHRL VPDLVAEMGE AYPELAQVAE RVAQVLRQEE 370 380 390 400 410 420 KRFGETLEHG MKILDGALAK VAKGDPLDGT TLFTLYDTYG FPVDLTADIC RERGVEVDMA 430 440 450 460 470 480 GFEAAMQRQR EQARAAGKFK MAEGLSYEGA ETRFEGYESL ELSGVKVTAL YVEGTQVEQV 490 500 510 520 530 540 SAGQDAVVVL DATPFYAESG GQVGDTGLLE AGGVRFAVAD TLKIQPGVFG HHGTLEAGAL 550 560 570 580 590 600 KVGDTLLARV DAVRRARTVR NHSATHLMHK ALREVLGAHV QQRGSLVDPD KTRFDFAHDA 610 620 630 640 650 660 PMTAEQIARV EAIVNAEVLA NQATEAKVMA YDDAVKGGAM ALFGEKYGDT VRVLDIGFSR 670 680 690 700 710 720 ELCGGTHVRR TGDIGLFKVV SEGGVAAGVR RIEAITGDNA LAWVQDQNVL LQRAAGVLRA 730 740 750 760 770 780 PAHELPERIA QVQEQLKALE KELEQARTKL AASAGNDLAA TATVEVKGIK VLAASIGDVD 790 800 810 820 830 840 PKALRGMVDN LKDRLKPAVV LLAAGSADGK ISLVGGVTAD LTGRIKAGDL VGFVAGQVGG 850 860 870 KGGGRPDMAM GGGTDLAALP AAVASVQKWV DERL

References

[1]

"Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica." Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N.R., Harris D.E., Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., Cerdeno-Tarraga A.-M., Temple L., James K.D., Harris B., Quail M.A., Achtman M., Atkin R., Baker S. , Basham D., Bason N., Cherevach I., Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., Barrell B.G., Maskell D.J. Nat. Genet. 35:32-40(2003) [PubMed: 12910271] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 12822 / ATCC BAA-587 / NCTC 13253.

Cross-references

Sequence databases
EMBLGenBankDDBJ	BX640431 Genomic DNA. Translation: CAE38162.1.
RefSeq	NP_885068.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	1667317.
GenomeReviews	Gene locus BPP2870 in contig BX470249_GR.
KEGG	bpa:BPP2870.
NMPDR	fig|257311.1.peg.2702.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q7W6N4.
Enzyme and pathway databases
BioCyc	BPAR257311:BPP2870-MON.
Family and domain databases
HAMAP	MF_00036. [Tree]
InterPro	IPR002318. Ala-tRNA-synth_IIc. IPR003156. Pesterase_DHHA1. IPR012947. tRNA_SAD. [Graphical view]
Pfam	PF02272. DHHA1. 1 hit. PF01411. tRNA-synt_2c. 1 hit. PF07973. tRNA_SAD. 1 hit. [Graphical view]
PRINTS	PR00980. TRNASYNTHALA.
TIGRFAMs	TIGR00344. alaS. 1 hit.
PROSITE	PS50860. AA_TRNA_LIGASE_II_ALA. 1 hit. [Graphical view]
ProDom	Q7W6N4. [Graphical view] [Entries sharing at least one domain]
BLOCKS	Search...
Other Resources
ProtoNet	Search...

Entry information

Entry name

SYA_BORPA

Accession

Primary (citable) accession number: Q7W6N4

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 16, 2004
Last sequence update:	October 1, 2003
Last modified:	July 22, 2008
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)