Reviewed, UniProtKB/Swiss-Prot Q83EQ9 (RS5_COXBU)

Names and origin

Protein names

Recommended name:
    30S ribosomal protein S5

Gene names

Name:	rpsE
Ordered Locus Names:	CBU_0255

Organism

Coxiella burnetii [Complete proteome] [HAMAP]

Taxonomic identifier

777 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Legionellales › Coxiellaceae › Coxiella

Protein attributes

Sequence length	168 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	With S4 and S12 plays an important role in translational accuracy By similarity. Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body By similarity.
Subunit structure	Part of the 30S ribosomal subunit. Contacts proteins S4 and S8 By similarity.
Domain	The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.
Sequence similarities	Belongs to the ribosomal protein S5P family. Contains 1 S5 DRBM domain.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view
Molecule processing
	Chain	1 – 168	168	30S ribosomal protein S5
Regions
	Domain	13 – 76	64	S5 DRBM

Sequences

	Sequence		Length	Mass (Da)
	Q83EQ9-1 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: A2D34F7298CDF796	FASTA	168	17,486
	10 20 30 40 50 60 MQEAGIGTTT DGIQEKLVAV RRTAKVVKGG RVFGFSALVV AGDGDGKVGF GLGKAREVPS 70 80 90 100 110 120 AIQKATENAR RNMISVPLYG ATLHHAIKAT HASSTVLMLP ASEGTGVIAG NAMRAIFEVM 130 140 150 160 GVQNVLAKCI GSSNPINVVR ATFKGLKQME TPESVAAKRG KAIEEIVE

References

[1]

"Complete genome sequence of the Q-fever pathogen, Coxiella burnetii." Seshadri R., Paulsen I.T., Eisen J.A., Read T.D., Nelson K.E., Nelson W.C., Ward N.L., Tettelin H., Davidsen T.M., Beanan M.J., DeBoy R.T., Daugherty S.C., Brinkac L.M., Madupu R., Dodson R.J., Khouri H.M., Lee K.H., Carty H.A. , Scanlan D., Heinzen R.A., Thompson H.A., Samuel J.E., Fraser C.M., Heidelberg J.F. Proc. Natl. Acad. Sci. U.S.A. 100:5455-5460(2003) [PubMed: 12704232] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Nine Mile phase I / RSA 493.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AE016828 Genomic DNA. Translation: AAO89813.1.
RefSeq	NP_819299.1.
3D structure databases
HSSP	HSSP built from PDB template 1PKP based on UniProtKB P02357.
ModBase	Search...
Genome annotation databases
GeneID	1208136.
GenomeReviews	Gene locus CBU_0255 in contig AE016828_GR.
KEGG	cbu:CBU_0255.
NMPDR	fig|227377.1.peg.243.
TIGR	CBU_0255.
Phylogenomic databases
HOGENOM	Q83EQ9.
Enzyme and pathway databases
BioCyc	CBUR227377:CBU_0255-MON.
Family and domain databases
HAMAP	MF_01307. [Tree]
InterPro	IPR014720. dsRNA-bd-like. IPR000851. Ribosomal_S5. IPR005712. Ribosomal_S5_bac-type. IPR005324. Ribosomal_S5_C. IPR014721. Ribosomal_S5_D2-type_fold. IPR013810. Ribosomal_S5_N. [Graphical view]
Gene3D	G3DSA:3.30.160.20. dsRNA-bd-like. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit.
PANTHER	PTHR13718. Ribosomal_S5. 1 hit.
Pfam	PF00333. Ribosomal_S5. 1 hit. PF03719. Ribosomal_S5_C. 1 hit. [Graphical view]
TIGRFAMs	TIGR01021. rpsE_bact. 1 hit.
PROSITE	PS00585. RIBOSOMAL_S5. 1 hit. PS50881. S5_DSRBD. 1 hit. [Graphical view]
ProDom	Q83EQ9. [Graphical view] [Entries sharing at least one domain]
BLOCKS	Search...
Other Resources
ProtoNet	Search...

Entry information

Entry name

RS5_COXBU

Accession

Primary (citable) accession number: Q83EQ9

Entry history

Integrated into UniProtKB/Swiss-Prot:	August 30, 2005
Last sequence update:	June 1, 2003
Last modified:	July 22, 2008
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)