Reviewed, UniProtKB/Swiss-Prot Q83ER1 (RL6_COXBU)

Names and origin

Protein names

Recommended name:
    50S ribosomal protein L6

Gene names

Name:	rplF
Ordered Locus Names:	CBU_0253

Organism

Coxiella burnetii [Complete proteome] [HAMAP]

Taxonomic identifier

777 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Legionellales › Coxiellaceae › Coxiella

Protein attributes

Sequence length	178 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center By similarity.
Subunit structure	Part of the 50S ribosomal subunit By similarity.
Sequence similarities	Belongs to the ribosomal protein L6P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view
Molecule processing
	Chain	1 – 178	178	50S ribosomal protein L6

Sequences

	Sequence		Length	Mass (Da)
	Q83ER1-1 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: 2C5F0AA88ABE68A1	FASTA	178	19,196
	10 20 30 40 50 60 MVSRVAKNPI KIPTGVEVNV AGQQITVKGK LGTLTRVIHR AVKVTKTDAE LQTICANDSP 70 80 90 100 110 120 GSNALAGTAR AVLANMVQGV HTGFQRKLVM VGVGYRAKAE GKKLNLTVGL SHPVNIEMPE 130 140 150 160 170 GITVETPSQT EIIVKGADKQ RVSQVAANIR EIRPPEPYKG KGIRYDNERV ILKEAKKK

References

[1]

"Complete genome sequence of the Q-fever pathogen, Coxiella burnetii." Seshadri R., Paulsen I.T., Eisen J.A., Read T.D., Nelson K.E., Nelson W.C., Ward N.L., Tettelin H., Davidsen T.M., Beanan M.J., DeBoy R.T., Daugherty S.C., Brinkac L.M., Madupu R., Dodson R.J., Khouri H.M., Lee K.H., Carty H.A. , Scanlan D., Heinzen R.A., Thompson H.A., Samuel J.E., Fraser C.M., Heidelberg J.F. Proc. Natl. Acad. Sci. U.S.A. 100:5455-5460(2003) [PubMed: 12704232] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Nine Mile phase I / RSA 493.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AE016828 Genomic DNA. Translation: AAO89811.1.
RefSeq	NP_819297.1.
3D structure databases
HSSP	HSSP built from PDB template 1C04 based on UniProtKB P02391.
ModBase	Search...
Genome annotation databases
GeneID	1208134.
GenomeReviews	Gene locus CBU_0253 in contig AE016828_GR.
KEGG	cbu:CBU_0253.
NMPDR	fig|227377.1.peg.241.
TIGR	CBU_0253.
Phylogenomic databases
HOGENOM	Q83ER1.
Enzyme and pathway databases
BioCyc	CBUR227377:CBU_0253-MON.
Family and domain databases
HAMAP	MF_01365. [Tree]
InterPro	IPR000702. Ribosomal_L6. IPR002358. Ribosomal_L6_CS1. [Graphical view]
Gene3D	G3DSA:3.90.930.12. Ribosomal_L6. 2 hits.
PANTHER	PTHR11655. Ribosomal_L6. 1 hit.
Pfam	PF00347. Ribosomal_L6. 2 hits. [Graphical view]
PIRSF	PIRSF002162. Ribosomal_L6. 1 hit.
PRINTS	PR00059. RIBOSOMALL6.
ProDom	PD002236. Ribosomal_L6. 1 hit. [Graphical view] [Entries sharing at least one domain]
PROSITE	PS00525. RIBOSOMAL_L6_1. 1 hit. [Graphical view]
BLOCKS	Search...
Other Resources
ProtoNet	Search...

Entry information

Entry name

RL6_COXBU

Accession

Primary (citable) accession number: Q83ER1

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 28, 2006
Last sequence update:	June 1, 2003
Last modified:	July 22, 2008
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)