Reviewed, UniProtKB/Swiss-Prot Q8LR86 (WOX5_ORYSJ)

Names and origin

Protein names

Recommended name:
    WUSCHEL-related homeobox 5
Alternative name(s):
    OsWOX5
    Protein WOX2

Gene names

Name:	WOX5
Ordered Locus Names:	Os01g0840300, LOC_Os01g62310
ORF Names:	P0408C03.23

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	313 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Function	Transcription factor which may be involved in developmental processes By similarity.
Subcellular location	NucleusBy similarity.
Sequence similarities	Belongs to the WUS homeobox family. Contains 1 homeobox DNA-binding domain.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Domain	Homeobox
Ligand	DNA-binding
Molecular function	Developmental protein
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view
Molecule processing
	Chain	1 – 313	313	WUSCHEL-related homeobox 5
Regions
	DNA binding	40 – 104	65	Homeobox; WUS-type

Sequences

	Sequence		Length	Mass (Da)
	Q8LR86-1 [UniParc]. Last modified October 1, 2002. Version 1. Checksum: 3BD94F8D00CF9A83	FASTA	313	33,206
	10 20 30 40 50 60 METTTTTLGG GGGGRAGGFS DPPSPLSPPL SPASAAAAAL ANARWTPTKE QIAVLEGLYR 70 80 90 100 110 120 QGLRTPTAEQ IQQITARLRE HGHIEGKNVF YWFQNHKARQ RQKQKQQSFD YFSKLFRRPP 130 140 150 160 170 180 PLPVLHRPLA RPFPLAMAPT AMPPPPPPPA TTTTAACNAG GVMFRTPSFM PVATNNASYY 190 200 210 220 230 240 PQQQTPLLYP GMEVCPHDKS TAQPPATTTM YLQAPPSSAH LAAAAGRGAA EAEGHGRRGG 250 260 270 280 290 300 GAGGRETLQL FPLQPTFVLP DHKPLRAGSA CAAVSPTTPS ASASFSWESE SSDSPSSEAP 310 PFYDFFGVHS GGR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome sequence and structure of rice chromosome 1." Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T. Nature 420:312-316(2002) [PubMed: 12447438] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed: 16100779] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana." The rice annotation project (RAP) Genome Res. 17:175-183(2007) [PubMed: 17210932] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[4]	"The shoot stem cell niche in angiosperms: expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution." Nardmann J., Werr W. Mol. Biol. Evol. 23:2492-2504(2006) [PubMed: 16987950] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 40-104.
[5]	"A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required for rice leaf development." Dai M., Hu Y., Zhao Y., Liu H., Zhou D.-X. Plant Physiol. 144:380-390(2007) [PubMed: 17351053] [Abstract] Cited for: NOMENCLATURE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AP003241 Genomic DNA. Translation: BAB93218.1. AP008207 Genomic DNA. Translation: BAF06673.1. AM234749 mRNA. Translation: CAJ84141.1.
RefSeq	NP_001044759.1.
UniGene	Os.16013
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	4327390.
KEGG	osa:4327390.
NMPDR	fig|39947.1.peg.7487.
Organism-specific databases
Gramene	Q8LR86.
Family and domain databases
InterPro	IPR001356. Homeobox. [Graphical view]
Pfam	PF00046. Homeobox. 1 hit. [Graphical view]
SMART	SM00389. HOX. 1 hit. [Graphical view]
PROSITE	PS00027. HOMEOBOX_1. False negative. PS50071. HOMEOBOX_2. 1 hit. [Graphical view]
ProDom	Q8LR86. [Graphical view] [Entries sharing at least one domain]
BLOCKS	Search...
Other Resources
ProtoNet	Search...

Entry information

Entry name

WOX5_ORYSJ

Accession

Primary (citable) accession number: Q8LR86
Secondary accession number(s): A0AAT0

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 13, 2007
Last sequence update:	October 1, 2002
Last modified:	July 22, 2008
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)