Unreviewed, UniProtKB/TrEMBL Q9M2U5 (Q9M2U5_ARATH)

Names and origin

Protein names

Submitted name:
    Class IV chitinase (CHIV) (At3g54420) EMBL CAB81807.1

Gene names

Name:	T12E18_110 EMBL CAB81807.1
Ordered Locus Names:	At3g54420 TAIR At3g54420

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	273 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Sequence similarities

Contains 1 chitin-binding type-1 domain. RuleBase RU000410V1

Ontologies

Keywords
Ligand	Chitin-binding RuleBase RU000410V1 Spearmint SPM001002
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cell wall catabolic process Inferred from electronic annotation. Source: InterPro chitin catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	chitin binding Inferred from electronic annotation. Source: InterPro chitinase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9M2U5-1 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: 1DB0A002F4EF44EC	FASTA	273	29,436
	10 20 30 40 50 60 MLTPTISKSI SLVTILLVLQ AFSNTTKAQN CGCSSELCCS QFGFCGNTSD YCGVGCQQGP 70 80 90 100 110 120 CFAPPPANGV SVAEIVTQEF FNGIISQAAS SCAGNRFYSR GAFLEALDSY SRFGRVGSTD 130 140 150 160 170 180 DSRREIAAFF AHVTHETGHF CYIEEIDGAS KDYCDENATQ YPCNPNKGYY GRGPIQLSWN 190 200 210 220 230 240 FNYGPAGTAI GFDGLNAPET VATDPVISFK TALWYWTNRV QPVISQGFGA TIRAINGALE 250 260 270 CDGANTATVQ ARVRYYTDYC RQLGVDPGNN LTC

References

[1]	Bloecker H., Mewes H.W., Lemcke K., Mayer K.F.X., Quetier F., Salanoubat M. Submitted (NOV-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[2]	EU Arabidopsis sequencing project Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs." Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K. , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K. Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[4]	"Arabidopsis ORF clones." Shinn P., Chen H., Cheuk R., Kim C.J., Bowser L., Carninci P., Dale J.M., Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M. , Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	BT010422 mRNA. Translation: AAQ62423.1. AK176488 mRNA. Translation: BAD44251.1. AL132971 Genomic DNA. Translation: CAB81807.1.
PIR	T47601.
RefSeq	NP_191010.1.
UniGene	At.35109
3D structure databases
HSSP	HSSP built from PDB template 1MMC based on UniProtKB P27275.
ModBase	Search...
Genome annotation databases
GeneID	824608.
KEGG	ath:AT3G54420.
NMPDR	fig|3702.1.peg.16742.
Organism-specific databases
TAIR	At3g54420.
Gene expression databases
ArrayExpress	Q9M2U5.
Family and domain databases
InterPro	IPR001002. Chitin_bd_1. IPR016283. Glyco_hydro_19. IPR000726. Glyco_hydro_19_cat. [Graphical view]
PANTHER	PTHR22595. Glyco_hydro_19_cat. 1 hit.
Pfam	PF00187. Chitin_bind_1. 1 hit. PF00182. Glyco_hydro_19. 1 hit. [Graphical view]
PIRSF	PIRSF001060. Endochitinase. 1 hit.
PRINTS	PR00451. CHITINBINDNG.
ProDom	PD000609. Chitin_binding_1. 1 hit. PD354900. Glyco_hydro_19. 1 hit. [Graphical view] [Entries sharing at least one domain]
SMART	SM00270. ChtBD1. 1 hit. [Graphical view]
PROSITE	PS00026. CHIT_BIND_I_1. 1 hit. PS50941. CHIT_BIND_I_2. 1 hit. PS00773. CHITINASE_19_1. 1 hit. [Graphical view]

Entry information

Entry name

Q9M2U5_ARATH

Accession

Primary (citable) accession number: Q9M2U5

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2000
Last sequence update:	October 1, 2000
Last modified:	October 14, 2008
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)